Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00382 ATGGCTTCTCTTGTTCTTCAATTCACTGCTCTCAAGTGCTCTCCACTCTCTTCTTCTTTTCTCTCCCAACCTTCCCTTTTCACCCAACATCGCCATAACCAAAGGCGCGCTTCAACTTCCATAGTCAACTCTGTAGCATTGGCCAATGCACAGAACAAAGAGAGAGTCCAGCTCAAGAAGCTCTTCGAAGAAGCCTATGAGAGATGCCGTACTGCTCCCATGGAAGGGGTCTCCTTCACCCTCGAAGATTTCACTGCTGCTCTCGACAAGTATGATTTTGATTCTGAAGTTGGCTCCAAGGTTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGACATCACTGCAAAGTCCTCGGCGTATTTGCCGCTGCAAGAAGCGAGCATCCGCAGGGTTAGGCACGTGGAAGAGGCGGGCATAGTTGCTGGATTGAGAGAGGAGTTTTTGATCATTGGTGAGAATCAAGCGGATGATAGCTTGATCTTGAGTTTAAGGTCGATTCAGTATGATCTTGCATGGGAACGTTGCAGGCAGCTTCAGGCAGAAGATGCTGCTGTCAAGGGTAAGATTGTGGGGGTGAACAAAGGTGGAGTGGTGGCTGAGGTTGAAGGGCTTAGAGGGTTTGTTCCATTGTCACAATTGTCAACGAACTCCAATATAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGTAACCGCAAGGCCATAGCTGGCAACCAGGCACAGCTAGGAATTGGTTCAGTGGTTACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATCAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATCTCAACTGTTCTTCAACCTGGCGACATATTAAAGGTGATGATCTTAAGTCATGACCGTGAGAGAGGTCGAGTAAGTCTTTCAACTAAGAAGTTAGAGCCCACACCTGGAGACATGATCCGCAATCCAAAGATTGTCTTTGAGAAGGCTGAGGAGATGGCTCAAACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTCTCAGCAGTGATGGGATCCTGGGACAATTTACTTCAGACTTGCCTGAAGAGGGACTAGATCTGACTGAGGTGCCACCAGCTGAAGCATCATGA 1242 0.4767 MASLVLQFTALKCSPLSSSFLSQPSLFTQHRHNQRRASTSIVNSVALANAQNKERVQLKKLFEEAYERCRTAPMEGVSFTLEDFTAALDKYDFDSEVGSKVKGTVFYTDNNGAVVDITAKSSAYLPLQEASIRRVRHVEEAGIVAGLREEFLIIGENQADDSLILSLRSIQYDLAWERCRQLQAEDAAVKGKIVGVNKGGVVAEVEGLRGFVPLSQLSTNSNIEELLEKELPLKFVEVDEEQSRLVLSNRKAIAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKIVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGQFTSDLPEEGLDLTEVPPAEAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00382 413 PRINTS Ribosomal protein S1 signature 189 205 IPR035104 -
Vian1g00382 413 PRINTS Ribosomal protein S1 signature 98 116 IPR035104 -
Vian1g00382 413 PRINTS Ribosomal protein S1 signature 116 130 IPR035104 -
Vian1g00382 413 PRINTS Ribosomal protein S1 signature 234 254 IPR035104 -
Vian1g00382 413 ProSiteProfiles S1 domain profile. 186 250 IPR003029 GO:0003676
Vian1g00382 413 Gene3D - 258 335 IPR012340 -
Vian1g00382 413 FunFam 30S ribosomal protein S1 82 179 - -
Vian1g00382 413 MobiDBLite consensus disorder prediction 387 413 - -
Vian1g00382 413 FunFam 30S ribosomal protein S1 259 338 - -
Vian1g00382 413 ProSiteProfiles S1 domain profile. 98 168 IPR003029 GO:0003676
Vian1g00382 413 CDD S1_RPS1_repeat_hs4 263 331 - -
Vian1g00382 413 ProSiteProfiles S1 domain profile. 263 331 IPR003029 GO:0003676
Vian1g00382 413 PANTHER 30S RIBOSOMAL PROTEIN S1 31 400 - -
Vian1g00382 413 SMART S1_6 261 331 IPR022967 -
Vian1g00382 413 SMART S1_6 96 168 IPR022967 -
Vian1g00382 413 SMART S1_6 184 250 IPR022967 -
Vian1g00382 413 Gene3D - 179 257 IPR012340 -
Vian1g00382 413 SUPERFAMILY Nucleic acid-binding proteins 185 253 IPR012340 -
Vian1g00382 413 Gene3D - 81 178 IPR012340 -
Vian1g00382 413 Pfam S1 RNA binding domain 262 331 IPR003029 GO:0003676
Vian1g00382 413 Pfam S1 RNA binding domain 184 248 IPR003029 GO:0003676
Vian1g00382 413 SUPERFAMILY Nucleic acid-binding proteins 262 341 IPR012340 -
Vian1g00382 413 Coils Coil 348 368 - -
Vian1g00382 413 CDD S1_RPS1_repeat_ec2_hs2 186 250 - -
Vian1g00382 413 FunFam 30S ribosomal protein S1, chloroplastic 180 256 - -
Vian1g00382 413 SUPERFAMILY Nucleic acid-binding proteins 93 193 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00382 Vian-Chr1 3405792 3409014 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00382 K02945 - gmx:100812847 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00382 1 3405792 3409014 Vian1g00382 1 3405792 3409014 ECH
Vian1g00382 1 3405792 3409014 Vian6g01147 6 29061403 29065355 PCT