Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01085 ATGAGCGTCTTTGCCATGATTCTTCTCACTCCCATATTTCTGTTAACCCTCGCCGCCGCGGCCACCGCCACCTTCCTTTTCGCGGTGGTTGGGGCCGTGCTGTTCCAAACTGGGTGTGGCAAGAGGGTATGGAGAAGAATGGAAGATTGGTTCCACGTGTATCAATTCCTCACAGTACCTGAACTCAACCAAACCAAACACCACAACCACCTCTACACCAAGCTCTCCCTATACTTACATTCCCTGCCTTCCATTCAAGACTCCCACTTAGCCAACCTCGTCACTGGGAAGAACCAAAACGATGTCGTCCTCTGCCTTGCCCCCAACCAAACCATCCAGGACCATTTTCTCGGAGCCACAGTCTACTGGTTCAACCAACCCGCTCATCCCAACCCAGAAGGAACCGGAACCTACGTGCTCAAGATCAGGAAGGTGGACAAGCGCCGAATCCTCCGTCCTTATCTTCAGCACATTCACGCCGTAGCCGACGAAATCGAGCTGCAAGGGAAGCGCGACTTGCGCCTCTTCACCAACAGCGCCGATGAGTTTGGGCAGTGGAGATCCGTTCCGTTTACTCATCCTTCCACGTTCGACACCATCGCCATGGAACCGGATCTCAAAAGCAAGGTCAAATCCGATCTCGAATCCTTCCTCAGAGCGAAACAGTACTACCACCGCCTCGGCCGCGTCTGGAAACGGAGCTTCCTCCTCTATGGTCCCTCCGGCACCGGAAAATCGAGCTTCGTCGCCGCCATGGCCAATTTCCTCTCCTACGACGTGTTCGACATCGACCTGAATAAAATCCCTAGCGATTCGGATCTGAAATTGCTCCTCCTGCATACGACGCCGAAATCGGTGGTGGTGATCGAGGACCTGGACCGGTTTGTGGCGGAGAAAACGGAGAGAATAAGCGTTTCGGGGATACTAAACTTCATGGACGGGCTTATAACCTCGTGTTGCGCGGAAGAGAGAGTGATGGTGTTCACGATGAACACGAAGGAGCATGTTGACCCGAACCTGCTTCGTCCGGGTCGGGTCGATGTGCATATCCATTTTCCGCTTTGTGATTTTTCGGCGTTTAAGACGCTGGCGAATAGTTACCTTGGGGTGAAGGACCATAAGCTGTTCCCTCAGGTGCAAGAGATTTTCCAAAACGGTGCGAGTTTGAGTCCCGCTGAAATCGGTGAGTTGATGATCGCGAACCGGAACTCGCCGAGTCGGGCCATTAGATCAGTCATAACCGCATTGCAAACCGACGGTGATGGCAGGGGGTGCGGCTTGATCGGACGGCAAAAGGAGGATGATGAAATGGATGAACCGGATGGGATTGTCTGCAGTGAGGGTGTTCATACGGTTAAGGATTTGCGGAGACTGTACAGTTTTTTCAGATTCAGGGTTACGAGAAAATCTTCATCCTCCAATTCTTCCTTGACCGCTACTCCATTGCGATAA 1452 0.5262 MSVFAMILLTPIFLLTLAAAATATFLFAVVGAVLFQTGCGKRVWRRMEDWFHVYQFLTVPELNQTKHHNHLYTKLSLYLHSLPSIQDSHLANLVTGKNQNDVVLCLAPNQTIQDHFLGATVYWFNQPAHPNPEGTGTYVLKIRKVDKRRILRPYLQHIHAVADEIELQGKRDLRLFTNSADEFGQWRSVPFTHPSTFDTIAMEPDLKSKVKSDLESFLRAKQYYHRLGRVWKRSFLLYGPSGTGKSSFVAAMANFLSYDVFDIDLNKIPSDSDLKLLLLHTTPKSVVVIEDLDRFVAEKTERISVSGILNFMDGLITSCCAEERVMVFTMNTKEHVDPNLLRPGRVDVHIHFPLCDFSAFKTLANSYLGVKDHKLFPQVQEIFQNGASLSPAEIGELMIANRNSPSRAIRSVITALQTDGDGRGCGLIGRQKEDDEMDEPDGIVCSEGVHTVKDLRRLYSFFRFRVTRKSSSSNSSLTATPLR 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01085 483 Pfam Domain associated at C-terminal with AAA 44 123 IPR025753 -
Vian6g01085 483 PANTHER BCS1 AAA-TYPE ATPASE 48 425 - -
Vian6g01085 483 Gene3D - 187 354 IPR027417 -
Vian6g01085 483 SMART AAA_5 231 356 IPR003593 GO:0016887
Vian6g01085 483 Pfam ATPase family associated with various cellular activities (AAA) 236 354 IPR003959 GO:0005524|GO:0016887
Vian6g01085 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 415 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01085 Vian-Chr6 28247393 28248844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01085 227 352 Calmodulin-binding Proteins AT3G56690 30.496 3.86e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01085 - K08900 gmx:100805212 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01085 6 28247393 28248844 Vian9g00505 9 5496781 5498211 PCT