Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g01040 ATGTTAGAGAAAGTGGAGGAGTTAAATATGGACAAAGTTATAGAAGAATTTGAGTTACTGTCAAAGGACGCGGAAAGGGTTCAGAGGGAAACTCTGAAAAAGATTTTGGAAGATAACGCGTCAGCTGAGTATTTGCAGAGTTTGGGTCTCAATGGAAGAACTGATCCCGAGAGTTTCAAGGCTTGTGTTCCACTGGTTACCCACAAAGAATTGGAACCTTACATATACAGAATTATCGATGGCGATGCTTCTCCTATTCTCACTGGCAAACCCATCACAACCATGTCTTTAAGCTCTGGCACTACCCAGGGGAAGCCAAAGTATGTACCCTGGAACGATGAATTGTATGAAACCACAATGCAGATATACCAGACCTCTTTTGCCTTTAGAAACAGAGAGTTTCCCATAAAAAATGGGAAGGCTTTGAGCTTTATATACGGAAGCAAGCAGTTCAAAACAAAAGGGGGTCTGGCGGCTAGAACTGCTACAAGCAATGTGTTCAGTAATGCTGGTTATAAGTGTGCAATGAGGGCACTGCAATCCCAATGCTGCAGCCCAGACGAAGTGATATTTGGTCCTGATTTTTTCCAATCATTGTATTGCCATCTGTTGTGTGGTCTTATATTCCGGGACGAGGTTCAATTTGTGTCTTCTACATTTGCTCACAGTATTGTCCATGCTTTTAGAACCTTTGAACAAGTGTGGGAAGAGCTGTGTACTGATATCAGAGAAGGGGTTCTCAGCAGCAGGGTCATCGTACCTTCGATTCGAATGGCTATGTCTAAACTGATGAAGCCAAACCCGAAATTAGCCAACTTGATCCACAAAAAATGTACGGGGTTGAGCAACTGGTACGGGTTGATACCAGAGCTTTTTCCCAATGCTAAGTATATTTATGGCATCATGACTGGATCAATGGAGCCTTATTTGAAAAAGTTGAGGCACTATGCAGGGGAGCTGCCTTTGTTGACTGCTGACTATGGATCTTCTGAGGGTTGGATTGCAGCAAATGTGAACCCACAATACCCCCCTGAGTATGCCACCTATGCTGTGCTTCCTCACATCGGTTACTTCGAATTCATTCCTCTCTCAGAGCTTGACAACACCAGGGGTCAACCAGATTTCCTTTGTATTGATCCTCAGCCTGTGAGCCTCACTCAAGTCAAGGTTGGTGAAGAGTATGAAGTTGTTATGACCAATCCAGCAGGATTATACCGGTATAGATTGGGGGATGTGGTGAAGGTTATGGGATTCCACAACTCAACTCCAGAACTGAAGTTTGTTCGGCGTAGCAGTCTTCTGCTAAACATTAATATCGACAAGAACACTGAGAAGGATTTACAGGTAGCTGTGGAAGCAGCTGCAAAGTTGTTAGCGGAAGAAAAATTGGAAGTTGTTGATTACAGCAGCCACGTTGATTTATCCGAAGAACCGGGACACTACGTCATCTTCTGGGAGATCAGTGGGGAAGCAAGTGAAGAACTCCTCCACGAATGCTGTAACTGTTTGGACAAGTCTTTTGTTGATGCAGGCTACATCAGTTCTCGCAAAGTGAACTGCATCGGTGCCCTCGAACTACGAGTTGTTCGGAGAGGAACATTCCAGAAGATTCTGGATCATTACCTAGGACTAGGAACCGCCGTTAGTCAGTATAAGACACCGAGATGTGTCGGTCCTACAAACGCCGTGGTGCTGCAGATCTTTAGTGAAAACGTTGTGAATAACTATCTCAGTACTGCTTTCTAA 1746 0.4433 MLEKVEELNMDKVIEEFELLSKDAERVQRETLKKILEDNASAEYLQSLGLNGRTDPESFKACVPLVTHKELEPYIYRIIDGDASPILTGKPITTMSLSSGTTQGKPKYVPWNDELYETTMQIYQTSFAFRNREFPIKNGKALSFIYGSKQFKTKGGLAARTATSNVFSNAGYKCAMRALQSQCCSPDEVIFGPDFFQSLYCHLLCGLIFRDEVQFVSSTFAHSIVHAFRTFEQVWEELCTDIREGVLSSRVIVPSIRMAMSKLMKPNPKLANLIHKKCTGLSNWYGLIPELFPNAKYIYGIMTGSMEPYLKKLRHYAGELPLLTADYGSSEGWIAANVNPQYPPEYATYAVLPHIGYFEFIPLSELDNTRGQPDFLCIDPQPVSLTQVKVGEEYEVVMTNPAGLYRYRLGDVVKVMGFHNSTPELKFVRRSSLLLNINIDKNTEKDLQVAVEAAAKLLAEEKLEVVDYSSHVDLSEEPGHYVIFWEISGEASEELLHECCNCLDKSFVDAGYISSRKVNCIGALELRVVRRGTFQKILDHYLGLGTAVSQYKTPRCVGPTNAVVLQIFSENVVNNYLSTAF 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g01040 581 Coils Coil 10 30 - -
Vian6g01040 581 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 8 581 IPR004993 -
Vian6g01040 581 Pfam GH3 auxin-responsive promoter 16 557 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g01040 Vian-Chr6 27666942 27670062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g01040 12 579 EF-hand Containing Proteins AT1G23160 37.973 8.26e-134 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g01040 K14506 - gmx:100794598 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g01040 6 27666942 27670062 Vian9g00561 9 6439640 6442596 PCT