Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00883 ATGGACGACAGTGCTAAGAGTGCTGAACCGAGAGAATTTTCAAGTCCTTTGCTTTCCACAGAAATATTGCAAGCTTATCATGGTAACGATGGGGTTGAGTGTGAGGAAAAGAGGCAGGAAGAAACTTGGTCGGTACCAGCTATTCTTATACTTACCACCCTTGTTGCGGTCTCAGGTTCTTATGTTTTTGGGTCTGCTATTGGATATTCGTCTCCTTCTCAAAATGGAATCATGGATGATCTCAATCTCGGCGTGGCTGAGTATTCGATTTTTGGATCAATACTGACGATTGGAGCAATGATTGGGGCCATCATAAGTGGTAGAATAGCAGACTACGCAGGTCGAAGAGCTGCTATGGGTTTCTCCGAAGTATTCTGCATCTTGGGATGGCTTGCCATATCATTGTCAAAGGTTGGTTGGTGGCTTTACGTGGGAAGATTTTTGGTAGGATGTGGAATGGGCCTTCTATCTTATGTGGTACCAGTTTATGTGGCAGAAATAACACCCAAGAATCTCCGAGGGGGATTCACCACAGTTCATCAGTTAATGATTTGTTGTGGGGTATCATTAACTTATCTTATTGGATCGTTCTTAAATTGGAGGATTTTGGCTCTAATAGGAACTATTCCGTGTCTCGTACAACTTTTGGGTCTATTCTTCATTCCCGAATCTCCTAGGTGGCTGGCAAAATTTGGTCACTGGGAAACGAGTGAATCTGTTCTACAGCGTCTTAGAGGAAAGAATGCTGATGTTTCTCAAGAGGCCACTGAAATTAGAGATTTTACCGAAGCCCTTCAGACCAAAACAGAAGCTACCATTTTTGGCTTATTTCAGTTGCAGTATTTGAAGTCACTTACTGTAGGAGTTGGTCTGATGATACTGCAACAGTTTGGAGGGGTTAACGGCATTGCTTTTTATGCAAGTTCTATATTCATCTCTGCGGGTACATGCATATTCTTTTTTTAA 966 0.4234 MDDSAKSAEPREFSSPLLSTEILQAYHGNDGVECEEKRQEETWSVPAILILTTLVAVSGSYVFGSAIGYSSPSQNGIMDDLNLGVAEYSIFGSILTIGAMIGAIISGRIADYAGRRAAMGFSEVFCILGWLAISLSKVGWWLYVGRFLVGCGMGLLSYVVPVYVAEITPKNLRGGFTTVHQLMICCGVSLTYLIGSFLNWRILALIGTIPCLVQLLGLFFIPESPRWLAKFGHWETSESVLQRLRGKNADVSQEATEIRDFTEALQTKTEATIFGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFISAGTCIFFF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00883 321 Gene3D MFS general substrate transporter like domains 39 318 IPR036259 -
Vian6g00883 321 PRINTS Sugar transporter signature 60 70 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian6g00883 321 PRINTS Sugar transporter signature 143 162 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian6g00883 321 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vian6g00883 321 ProSiteProfiles Major facilitator superfamily (MFS) profile. 52 321 IPR020846 GO:0022857
Vian6g00883 321 PANTHER - 44 316 - -
Vian6g00883 321 ProSitePatterns Sugar transport proteins signature 1. 106 122 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vian6g00883 321 Pfam Sugar (and other) transporter 53 315 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vian6g00883 321 SUPERFAMILY MFS general substrate transporter 37 314 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00883 Vian-Chr6 26026672 26028931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00883 21 316 Organic Solute Cotransporters AT1G54730 68.581 2.73e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00883 K03444 - gmx:100786465 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g02061 2 40345704 40349604 Vian6g00883 6 26026672 26028931 ECH
Vian6g00883 6 26026672 26028931 Vian6g00883 6 26026672 26028931 ECH