Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00541 ATGGATGGGAAAAGCTCTCTACAAATAACTAGAAGTGGTACGGGTGATTATGATGATGATGGACATGCTAAAAGAACTGGGAATTTGAAGAGTGCTGTAGCTCATATCATTACTGCTGTTATTGGTTCTGGTGTTCTTTCTCTTGCATGGAGCACTTCTCAGTTAGGGTGGATTGGAGGGCCAATTGCCCTGCTTTGTTGTGCAATTGTCACCTATATTTCTTCATTCCTTCTGTCTGATTGCTACAGAACTCCTGATCCTGTAACTGGGAAAAGAAACTACTCTTACATGGATGCTGTTAGAACTTATCTTGGTATTAAAAGAACATGGATAGCTGGCTTCCTTCAATTTTTGACTTTATATGGGACTGGTATTGCATATGTTCTAACCACAGCAACATGTCTGGGGGCAATTCTGGAATCAAATTGTTTTCACAAGAAAGGGCATCAAGCTCCTTGTCATTTTGAGGGGAACATGTATATGGTGATGTTTGGAGTTGTTCAAATTGTAATGTCATTCATACCAGATCTCCATAACATGGAATGGGTTTCAGTTGTTGCCGCAATCATGTCCTTTACATACTCATTCATTGGACTAGGACTTGGCATAGCAACAGTCATAAAAAATGGAAGAATTATGGGGAGTTTGTCAGGAATACCAACTGATACAGTTGCTGACAAATTTTGGGCAGTCTTCCAAGCACTGGGTGACATTGCCTTTGCCTATCCATACTCAATTCTCCTTCTTGAGATTCAGGACACTTTAGAGTCTCCTCCACCAGAAAACCAGACTATGAAAAAGGCCTCAATGGTTGCAATCTTCATTACAACATTCTTCTACCTGTGCTGTGGATGCTTTGGATATGCAGCTTTTGGAAATCACACACCAGGAAATCTCTTGACAGGCCTTTTGAACGGGTCTGGATTTTATGAGCCTTTCTGGCTTGTTGACCTTGCTAATGTTTGCATCATTATTCATTTGATTGGAGGATATCAGGTTTACAGTCAACCTATATTCAGTACTGCTGATAGATGGGCTTCAAGAAGATTCCCCAACAGTGGGTTTGTGAACAATTTCTACAAAGTGAAACTGCCTTTAGTTCCTGGTTTTCAGCTAAACCTTTTCAGGTTCTGTTTTAGAACAGCCTATGTGATTACAACAGTTGGTGTTGCAATCTTGTTTCCTTACTTCAACGCAATTCTAGGAGTGTTAGGAGCCATAAACTTCTGGCCATTGGCTATATACTTCCCTGTAGAGATGTACTTTGTGCAGCACAAAGTTCCAGCTTGGAGTAGAAAATGGATTGTTCTAAGAACATTCAGCTTTGCATGTTTTCTTGTCAGTGTAATGGGGTTAATTGGGTCAGTTGTTGGCATTGTAAAAGAAAAATTGAGCTGA 1398 0.4027 MDGKSSLQITRSGTGDYDDDGHAKRTGNLKSAVAHIITAVIGSGVLSLAWSTSQLGWIGGPIALLCCAIVTYISSFLLSDCYRTPDPVTGKRNYSYMDAVRTYLGIKRTWIAGFLQFLTLYGTGIAYVLTTATCLGAILESNCFHKKGHQAPCHFEGNMYMVMFGVVQIVMSFIPDLHNMEWVSVVAAIMSFTYSFIGLGLGIATVIKNGRIMGSLSGIPTDTVADKFWAVFQALGDIAFAYPYSILLLEIQDTLESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGNHTPGNLLTGLLNGSGFYEPFWLVDLANVCIIIHLIGGYQVYSQPIFSTADRWASRRFPNSGFVNNFYKVKLPLVPGFQLNLFRFCFRTAYVITTVGVAILFPYFNAILGVLGAINFWPLAIYFPVEMYFVQHKVPAWSRKWIVLRTFSFACFLVSVMGLIGSVVGIVKEKLS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00541 465 PANTHER OS05G0424000 PROTEIN-RELATED 31 457 - -
Vian6g00541 465 Pfam Transmembrane amino acid transporter protein 26 460 IPR013057 -
Vian6g00541 465 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00541 Vian-Chr6 20827045 20829899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00541 6 447 Organic Solute Cotransporters AT1G77380 53.258 3.48e-180 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00541 K24917 - gmx:100818535 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00541 6 20827045 20829899 Vian6g00541 6 20827045 20829899 ECH
Vian6g00541 6 20827045 20829899 Vian7g01075 7 18963274 18965756 PCT