Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00444 ATGGATTCCCCACAATCTGTTGTATCACCCTTCAGAAGCTCAGTTTTGGGTGAGGGTGAGAAGCACAAGTCTGAAGTTTTCTCGGGAAACTCTAGTCCCTTGTCCAAGGACATTGAAGTGAATGGGAAGGAAGTTATCATGTCAAATGTAGAGGAATGTCTTGGAGTTCTTGATGTTTACATACATCAGGCCAGGGACATTCAGAACATTTGCATATACCACAAGCAAGATGTTTACGCTAGGATATGCCTGACCAGTAATCCGGAGAACACTGTGTCTACCAAAACCATCAATGGAGGAGGAAGGAACCCTGTGTTTAATGAGAATCTTCAAGTCAATATTAAAACTGTTGATGCTTCTCTCAAGTGTGAGATATGGATGCTTAGCAGGGTGAAGAATTATCTCGAAGACCAGCTGCTTGGTTTTGCCTTGGTGCCTTTGTCTGAAGTTCTAGTCCAGAATGGGAAACTGGAGAAAGAGTTCTCTCTTTCTTCAACTGATCTATTCCATTCTCCTTCAGGTTTTGTTCAGTTGACACTGTCTTACAATGGTGCTTCACCTGATGTTATGGCAATTTCTGCAATGCCAAGCAAGGTGGCCACAGATGCCCCTGTGAAGGATTCGGAAACATCCGAATCACTGGCCCGGGAATTAGACAAAATTGAGTTCCCGGATCCGAAGATTGTGAATGAAGACCGCTTGATGGTTTCAGAATACTTTGGCATTCCATGTGAGGAGACTAGGTGCTCTGATAGCCTGGCTACTTCTGATGCCGAAAATCGCAGTTGCGAAGCGGGTGTTCGCCTTGTGGAAAGTTTCTCAGCATGCAGTGGTGAATCTTTTCAGCCACCTAAGGTTGATTCCCCACCCAGCAGTGTGTCAACAAATGGGGTTTCTTCCCCTTCTGTGCCTGCAAGCTCAGAATCATCTGATGCTGCTGCTTCGAAGTCTCCTATTCAGGAGCAGGCTTCAGGCACCAAAGAGGGAAAAAATGTGGATGTGAAAGATGGTGACAGTGATTCCTCAAGTGGGGTTCCTAGTGACTCATTCCCTAAGCCTGTTGTGACTGTGAACATTGAGCCTGAGCCTAAGGTGGTGCAGCAGGATATAGTGGACATGTACATGAAAAGCATGCAGCAATTTACTGAGTCACTTGCAAAAATGAAGCTCCCTATGGACTTCGAAAGTGAACCAACTAGTTCAGGAAATTCATCCACTGAGCAAAAGCTACAGCCATCAAAGAGCAACAATTCCCGTGTGTTTTATGGTAGCAGAGCTTTCTTCTGA 1287 0.4522 MDSPQSVVSPFRSSVLGEGEKHKSEVFSGNSSPLSKDIEVNGKEVIMSNVEECLGVLDVYIHQARDIQNICIYHKQDVYARICLTSNPENTVSTKTINGGGRNPVFNENLQVNIKTVDASLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLTLSYNGASPDVMAISAMPSKVATDAPVKDSETSESLARELDKIEFPDPKIVNEDRLMVSEYFGIPCEETRCSDSLATSDAENRSCEAGVRLVESFSACSGESFQPPKVDSPPSSVSTNGVSSPSVPASSESSDAAASKSPIQEQASGTKEGKNVDVKDGDSDSSSGVPSDSFPKPVVTVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDFESEPTSSGNSSTEQKLQPSKSNNSRVFYGSRAFF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00444 428 MobiDBLite consensus disorder prediction 278 363 - -
Vian6g00444 428 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Vian6g00444 428 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 184 IPR035892 -
Vian6g00444 428 PANTHER EXPRESSED PROTEIN 1 428 - -
Vian6g00444 428 CDD C2 57 163 - -
Vian6g00444 428 MobiDBLite consensus disorder prediction 396 422 - -
Vian6g00444 428 SMART C2_3c 56 159 IPR000008 -
Vian6g00444 428 Pfam C2 domain 55 162 IPR000008 -
Vian6g00444 428 MobiDBLite consensus disorder prediction 278 327 - -
Vian6g00444 428 Gene3D C2 domain 51 207 IPR035892 -
Vian6g00444 428 MobiDBLite consensus disorder prediction 392 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00444 Vian-Chr6 18657219 18658505 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00444 - - gmx:100796499 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00444 6 18657219 18658505 Vian6g00444 6 18657219 18658505 ECH
Vian6g00444 6 18657219 18658505 Vian7g01137 7 19595009 19596307 PCT