Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00414 ATGGCACCCTCTATTATTTTCTCTGTGTTGTGCCCTTTGTTGGTTTTGACATGTGGTTATGTGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTCGAATATGCCAAGGAGTTGCTGATAGAGAAGGGTATTGCTTCCATTCTTATGCTTCAGCTGCCAGAGATTGAAAATTCTGCACAGGTTCCTCTTGTTGGAAATGCTAAAGTGGTTCTTTCTAACATCACAATTACGGATGTTCAGGTCAATTCTTCATCCGTTAAGACGGGAGAGAATGGAATTGTTCTTGTTGTTTCAGGAGCCATTGTTAATTTAAGTATGAGGTGGAGGTACACTGTCAGCTCTTGGTTAATTCCAATTGGAATTTCGGATAAAGGAACTGCTTCAGTGAAGGTTACAGGTATGCAAGTGGGGCTTACAATAAATTTAAGGAACGAAGAAGGAAGTCTGAAGTTGTCTCTCTTAGATTATGGATGTTATGTGGGAGACATGTCTATAAAGTTGGACGGAGGTGTATCTTGGCTTTACCAACTGCTAGTAGATGCTTTCGAAGGGAATATAGCATCTGCCATTGAAGAGGGCATTTCAGAGAAAATAAAAGAAGGGATAGTGAAGCTTGACAATTTTTTGGAATCTCTTCCAAAGAATATCTCACTAGACAAAACTGCTACACTAAATGTATCTTTTGTTGGCAATCCTGTGTTGAGCAGTTCCTCCATTGCAATTGCAATTAATGGTTTATTCACAGAGAAAAAGGAAGTTTTAGTACCTCAAGGTTACCACCAGAAAGAATTGAAGGTTTCTGCTGCCTGTGGTGGTTTACCAAAGATGATAAAAGTATCAATACATGAAAATGTCTTCAAATCTGCTTCCCAAGTTTACTTCAATGCAGGTAAAATGCAATTGATTGTTGATCAACTTCCTGGTCAGGCCATTTTGAACACTGCTGAATGGAGATTCATAGTTCCCGAATTATACAAGCGATATCCAAATGATGACATGCAGCTTAACATCTCTATGTCTTCTCCACCAGTTATACAAGTGACATATCAAGATGTTGGTGCAACTATACTTGTAGATATAACTATTGAGGTTCTGGAAGATGTTGAAGTCATACCTGTTGCATCCATCTCAGTGGAAATCAGTACTTCATGTGCTGTAGAAATTGTAGGAAATGGCATTGTTGGTAGGCTCACATTACAGGAATTTTCTACATACTTGAAATGGAGCAAAATAGGGAAACTGCACATGCGTCTGATTCAGTCACTAATGTCAAGTGTCCTCAGAACTGTTGTCCTTCCATACTTGAACTTCAAATTAAAGAGAGGATTTCCATTACCAATAATTGATGGTTATGGCTTTCAGAATGCTATTATCTTGTACAACCATCCATGGATAGCAGTGTGTACTGATGTTTTCTTCTTAGAAGATTACTATTTAGGTCAACAATCATCTTCAGCTTAG 1479 0.3881 MAPSIIFSVLCPLLVLTCGYVQPLEEGFISGVISDKGLEYAKELLIEKGIASILMLQLPEIENSAQVPLVGNAKVVLSNITITDVQVNSSSVKTGENGIVLVVSGAIVNLSMRWRYTVSSWLIPIGISDKGTASVKVTGMQVGLTINLRNEEGSLKLSLLDYGCYVGDMSIKLDGGVSWLYQLLVDAFEGNIASAIEEGISEKIKEGIVKLDNFLESLPKNISLDKTATLNVSFVGNPVLSSSSIAIAINGLFTEKKEVLVPQGYHQKELKVSAACGGLPKMIKVSIHENVFKSASQVYFNAGKMQLIVDQLPGQAILNTAEWRFIVPELYKRYPNDDMQLNISMSSPPVIQVTYQDVGATILVDITIEVLEDVEVIPVASISVEISTSCAVEIVGNGIVGRLTLQEFSTYLKWSKIGKLHMRLIQSLMSSVLRTVVLPYLNFKLKRGFPLPIIDGYGFQNAIILYNHPWIAVCTDVFFLEDYYLGQQSSSA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00414 492 Gene3D - 32 463 - -
Vian6g00414 492 Gene3D - 36 216 - -
Vian6g00414 492 SMART bpi1_3 33 258 IPR017942 GO:0008289
Vian6g00414 492 SMART bpi2_2 277 475 IPR001124 GO:0008289
Vian6g00414 492 Pfam LBP / BPI / CETP family, N-terminal domain 37 209 IPR017942 GO:0008289
Vian6g00414 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 241 IPR017943 GO:0008289
Vian6g00414 492 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 244 478 IPR017943 GO:0008289
Vian6g00414 492 PANTHER OS06G0309200 PROTEIN 9 487 IPR045897 -
Vian6g00414 492 PIRSF Lipid_binding_protein 6 483 IPR030675 GO:0005615|GO:0008289
Vian6g00414 492 FunFam phospholipid transfer protein-like 36 216 - -
Vian6g00414 492 Pfam LBP / BPI / CETP family, C-terminal domain 275 463 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00414 Vian-Chr6 17897439 17900589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00414 K05399 - gmx:100815362 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00414 6 17897439 17900589 Vian6g00414 6 17897439 17900589 ECH
Vian6g00414 6 17897439 17900589 Vian7g01155 7 19835274 19838271 PCT