Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00389 ATGGAGCCTCACACGACGACTTCCTTCGTGTCCAAGGCGCGCATCGCGATCCATTCCGCTGCTGCGAAGGCGGAGCGTGTTCTGTTGGACTTCAAAACCGATCCAGATTCAGATAAGCAGTTTCACGACGAGTTAGGGAGGCGGCAGGGCGATGAATCTGCTCGGAGCGAACACGAGTCCAAGTTTCTCAATGAACTGAAGCATATAAAGTGGAGACCTCCGCATATAGGAACAAAGCAGGATTGGCAAGAAAGAATAAACAACATTCGAAAAGGGAGAAAAGAAGTTGAAGTAACAGATAAAGTTGGCGACATAAACATGGCCTCCGCTCCATTTTATGAACATTCGTACATTCTGAATGAGCAGAATGATCTTGATGCCAAGGTTGAAGGCTTAGCTGCTGCGACTGAACACCTCATCCCTCCATCGTCTGTCCTGAAGCAGTTGGCTATAGCTTTTGAGGCTGGAAAGAGAACAAACTCAATGAAAGATTTTATAGCTTCATCAAGAGGTTCATCACCTGCCAGAGAGAGGGCAGGCTTAAGTCTCTCTTCAATGAAGGCTTTAGTGTTGCGTGAAAAGGAGGCCAAACTTACCTCTGAGTTCAGTAGCGATGAAAAAGTTCTGTATTTGATTAATTCATTGTTTGATCCAGAAGGAAGGTTCCTTAGAAGGAAGATCAACTCTGATGCAGAGGAAACTTCCATATCATCTTTGTCAAGAGATATTCATGGTGCTCCTCCTGAAAGCTTAGTTGCTAAGCTAGCTGAAGTAATTGGAAACTTCAAGACGCTCCAAGAAATGGCTCTTTTTTGGTGCAGGGTTGTTGCTGAAATGAGAAAACATTGGTCCAAAGGGAAATATTTACCTGGAGTCCCGCAAGATGACATTCCAGATCTGAAATATTGTCTTCTGTATCAAAAATTTCAAGTAATTAATTGTTGCATTTCTCGGAAAAGGCGCAATATTATTGCTACTGAATCACTAAATTCTATGATGGCGGAAGCCAATTTAAATACATTAGAACCAGCAAAGTACACGGACAATATTCCTGCAATTCCTTTATTACATGCAAGGTTAAGGACTGGAGAGCTTGTTCTTCGACTTGGGGCTGATTGCCCATCTGGAGATCTGATGTTACTTGAAACAGGCGAGCCTGCATTCTCTCCTGTGACCCAGGAGGGACCCTTGCTTACAGAAGATTTGATCAAAGAGACAGAGGAGTTTGTGCTCCGGACAGGAAGTGTTGGTGCTGGATGCTCTCAACTCCTCTCTGACATGCAGGCATTCAAGGCTGCAAATCCTGGTTGCATTTTGGAAGATTTTGTGAGATGGTACTCTCCCCCTGACTGGACTGAAAGTGAGGGAACTGAGGATAGAGACTCTTCTTATTGCGATGAGTCAATGTCTACCAGAGGTCAACTAAGTCTACGTATGCAAAAGGAAGGTAATTTGTGGCGTGAATTATGGGAAACGTCTAAACCAGTTCCAGCTGTTAAACAGGCACCTCTCTACGATGAGGATTTGGCAGTGGAGGGTATTCTAGATGCATTTGAGGACATCCCGCCTTCGGAGCTTTTTGAACAACTGTTTGTTTCTATTCTCGGTTCAGGATTTTCAATTGCTGAAAATATGCTATCTGGTGATGTTGATATTTCAAAATCGTTAAATGACTGCAAGGACTACATAGTTACCGCTTGTCAAAGCAACAGATTCAATGAGAAACTCGATGAGCTTATTCAGATGTATGAAATGGTGGAGAAAATGATGGTGAATCCAGATGAGGCACTGAAGATAGTAAAGGTGATGGAAGAATTAGGTATGAGTGGTAGTGTACCAAAACGCCGGATATCTACTGCAAGTGTGTATGGAAAGAAGAGCAAGTCATCTTTATTTTCAAAAAAGCCTCCTAAGCCTGGAAATCTATACCCCGTCGAACAACCTCTCTCTCTGGAAATCAATTTCTTGTTCAGCTTTGCTTGTTGGGTTGGGCTTGTACAAGGATGA 2007 0.4325 MEPHTTTSFVSKARIAIHSAAAKAERVLLDFKTDPDSDKQFHDELGRRQGDESARSEHESKFLNELKHIKWRPPHIGTKQDWQERINNIRKGRKEVEVTDKVGDINMASAPFYEHSYILNEQNDLDAKVEGLAAATEHLIPPSSVLKQLAIAFEAGKRTNSMKDFIASSRGSSPARERAGLSLSSMKALVLREKEAKLTSEFSSDEKVLYLINSLFDPEGRFLRRKINSDAEETSISSLSRDIHGAPPESLVAKLAEVIGNFKTLQEMALFWCRVVAEMRKHWSKGKYLPGVPQDDIPDLKYCLLYQKFQVINCCISRKRRNIIATESLNSMMAEANLNTLEPAKYTDNIPAIPLLHARLRTGELVLRLGADCPSGDLMLLETGEPAFSPVTQEGPLLTEDLIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWYSPPDWTESEGTEDRDSSYCDESMSTRGQLSLRMQKEGNLWRELWETSKPVPAVKQAPLYDEDLAVEGILDAFEDIPPSELFEQLFVSILGSGFSIAENMLSGDVDISKSLNDCKDYIVTACQSNRFNEKLDELIQMYEMVEKMMVNPDEALKIVKVMEELGMSGSVPKRRISTASVYGKKSKSSLFSKKPPKPGNLYPVEQPLSLEINFLFSFACWVGLVQG 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00389 668 Pfam Rab3 GTPase-activating protein catalytic subunit 368 519 IPR026147 -
Vian6g00389 668 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 139 600 IPR045700 GO:0005096|GO:0043547
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00389 Vian-Chr6 16773940 16783274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00389 K18270 - gmx:100800515 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00389 6 16773940 16783274 Vian6g00389 6 16773940 16783274 ECH
Vian6g00389 6 16773940 16783274 Vian7g01192 7 20188863 20196927 PCT