Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00384 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCAAAGGCGGATCTGGCGCGCCGCTCCGGCGAGTCTCCGGCAGCCGCGTCGCAGCCCGATCTCCGGCGAAGCCACCGGCGCCGGAGTGTGAGGTACAACATCATCGACTATGATGGCGACTACCTCGACGACGAGGAGGATGAGAGAAGGCGCGAAAAAAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGATGGCGAAGAAGAGCCTGAAGAAGAAAATGACATGACGCCAAGCCGCACTGGCGCTGATGCTCCGGCGGACGAATACGAGGACGACGAAAACGAACAAGAGAAAGAGCACGAACACGAGCAAGAGGAAGAGCACGTAGAAGACGAAGATGGCGTGGTAAAGGGCAGAAAAGTGGAATCGAAAGGGCTGCACTCTATTTCTGTTTCAGGAACTCCGGTTATTCTTCAATCTGGGATTCCGTTGCCTGATAAGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTACGGTGTGTTTGCGGAGCCTGTTGATCCAGAAGAGCTACCTGATTATCATGATGTGATCGACCATCCCATGGACTTTGCCACTGTGAGGCAGAAGTTGGCAGCTGGATCTTATACTACTTTAGAACAATTTGAGAGTGATATATTTTTAATTTGCTCAAACGCAATGCAATACAATGCAGCGGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGGAAGAAGTTTGAGAAGTTAAGGATTGGGTTTGAACGCTCTCAGATGGAGCATAAATCAGAGCAAAAGGCAGGATCTAATTATTTTGTTAAGAAGCAACCAAAGAAGCCTCTAGTACGTACCTCACTGGAACCTGTTGGCTCTGATTTCTCTTCAGGAGCAACTCTTGCTACTATTGCAGATTTACAGCCAACTTCCCATCCGATGCAAGGCGGTAGATGTGAGAGGCCTGGCAATATTGATGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGACGTTTTATCAGGGAAAGGCCTTCACTCCAAGTGGGGAAGGAAGTCCGTTGTGCTTGATGAAAGTCGGCGTGCATCTTATAACATGTTCAATCAACCAATTGGTCGTTCAGAATCAATTTTTATGACTTTTGACAGTGAAATGAAGCAGCTGGTTGCTGTTGGACTTCATGCTGAGTATTCCTATGCTAGAAGTTTGGCTCGATTTAGTGCATCTCTTGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCAGGCTCTGCCACCTGGCTTCAAATATGGTCGTGGTTGGGTTGGAGAGTATGAACAGCTTCCAACCCCAATATTAATGGTTAATAATCAGGTCCAAAAAGGAACTAGTTTGGCCATGAAGTTGCATTCAACTATTGAGTTACCAAAGGGTGACAAAAGTTGTAAGAATGTGGAACCCAGCATTGAGCATCCTGTAAGTGGGCAGATGCTAGATGGAAAACATCCTTTGATGCCTGATGGTGAAGGAAAACCTTTCTTTGGTTCTTCTGGAGAAAGGATCTGTGCTCCTGCCAACATCCGAAATCAGGAGCAGAACAACCAATCCAGGAAAATGGGCAAACCTGAGAATAAGGGTTTGAAACAAGAAGAGTTGAATTCTTTATCCTCAAGTAAGCAGAATAATAATGGTCTGGTTGCAAAGTTTACTAGTAACACTCCTGCAGCAGAGTCCAAGCCCAGAGAGATGGTGCCAAGGAACAAGTTCAAGCAGCCAGGTGTTAGTGGAGAGTTGCCTAATGGAAAATCCACAGATACAAGTTTGAACAGACAAGTGACTGGTCCATCACTTGAAACTACATCAAGCAATTCAAGCAGGGAAGGTCCTGTTGTCCATGGGAAGGAGCTGGGTGTTAGCGACCCTGTTCAGTTGATGGGAATGTTTGCTGAAAGGGCTCAAAAGCAACACAATCTCAATCATTTCGTTGTTGATACTCCACCAGTGACACTATCGGGTCCATCCGGACAGAGAGATGACTTAGGCAATGCTTCAGCAGCTGCTGCCCGTGCATGGATGTCTGTTGGGGCAGGAGGGTTTAAACAAGGACCAGACAATTCTAGTTCACCCAAAAATCAGACATCTGCAGATTCTTTGTACAACTCAACAAGAGAGTTCCATCAGCATATTTCAAGAATTCGAGGGGATTTTCCCTCTGCTGGAATGCCTTTCCAACCATTTCAAGCACCTGTTCCTCAATCTAGTCACACAGGCACTGTTTCACAATTTCCCAACCGGCCTACGGTTTTCCCTCACTTAGCATCTGCTGACCAATCTAGATTTCAGATGCAGTCCCCTTGGCGAGGACTCAGTCCTCGTAGCCAGTCAAGGCAGAAACAGGAAACATTTCCACCTGACTTGAATATTGGTTTTCAATCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGTCCTCGTTGACTCACAGCAACCAGACCTGGCTTTGCAATTATGA 2535 0.4659 MVQIARRKKGRPSKADLARRSGESPAAASQPDLRRSHRRRSVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQDGEEEPEEENDMTPSRTGADAPADEYEDDENEQEKEHEHEQEEEHVEDEDGVVKGRKVESKGLHSISVSGTPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIDHPMDFATVRQKLAAGSYTTLEQFESDIFLICSNAMQYNAAETIYHKQARSIQELGRKKFEKLRIGFERSQMEHKSEQKAGSNYFVKKQPKKPLVRTSLEPVGSDFSSGATLATIADLQPTSHPMQGGRCERPGNIDGILEANAFWIDANQEKAEDVLSGKGLHSKWGRKSVVLDESRRASYNMFNQPIGRSESIFMTFDSEMKQLVAVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQALPPGFKYGRGWVGEYEQLPTPILMVNNQVQKGTSLAMKLHSTIELPKGDKSCKNVEPSIEHPVSGQMLDGKHPLMPDGEGKPFFGSSGERICAPANIRNQEQNNQSRKMGKPENKGLKQEELNSLSSSKQNNNGLVAKFTSNTPAAESKPREMVPRNKFKQPGVSGELPNGKSTDTSLNRQVTGPSLETTSSNSSREGPVVHGKELGVSDPVQLMGMFAERAQKQHNLNHFVVDTPPVTLSGPSGQRDDLGNASAAAARAWMSVGAGGFKQGPDNSSSPKNQTSADSLYNSTREFHQHISRIRGDFPSAGMPFQPFQAPVPQSSHTGTVSQFPNRPTVFPHLASADQSRFQMQSPWRGLSPRSQSRQKQETFPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00384 844 MobiDBLite consensus disorder prediction 755 775 - -
Vian6g00384 844 ProSiteProfiles Bromodomain profile. 171 241 IPR001487 GO:0005515
Vian6g00384 844 MobiDBLite consensus disorder prediction 500 642 - -
Vian6g00384 844 Pfam Bromodomain 165 245 IPR001487 GO:0005515
Vian6g00384 844 MobiDBLite consensus disorder prediction 704 724 - -
Vian6g00384 844 Gene3D - 158 278 IPR036427 GO:0005515
Vian6g00384 844 SUPERFAMILY Bromodomain 156 258 IPR036427 GO:0005515
Vian6g00384 844 ProSitePatterns Bromodomain signature. 177 233 IPR018359 -
Vian6g00384 844 PRINTS Bromodomain signature 188 204 IPR001487 GO:0005515
Vian6g00384 844 PRINTS Bromodomain signature 222 241 IPR001487 GO:0005515
Vian6g00384 844 PRINTS Bromodomain signature 174 187 IPR001487 GO:0005515
Vian6g00384 844 PRINTS Bromodomain signature 204 222 IPR001487 GO:0005515
Vian6g00384 844 MobiDBLite consensus disorder prediction 557 585 - -
Vian6g00384 844 Coils Coil 99 119 - -
Vian6g00384 844 CDD Bromodomain 159 255 - -
Vian6g00384 844 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 843 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 742 844 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 534 548 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 1 129 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 114 129 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 99 113 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 605 636 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 42 77 - -
Vian6g00384 844 MobiDBLite consensus disorder prediction 782 844 - -
Vian6g00384 844 SMART bromo_6 152 260 IPR001487 GO:0005515
Vian6g00384 844 MobiDBLite consensus disorder prediction 708 724 - -
Vian6g00384 844 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00384 Vian-Chr6 16713429 16719515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00384 K22184 - gmx:100792844 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00384 6 16713429 16719515 Vian6g00384 6 16713429 16719515 ECH
Vian6g00384 6 16713429 16719515 Vian7g01196 7 20241340 20246078 PCT