Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01587 ATGGGTCGCTGGCTTCTCTTTCTCATCATTCTCAGCCTTGTCGCATTAACTTTCCTCTCAGAGGTACAATCAGCATCCTTCAAGATTGTCAACAAGTGTCGCCACACGATATGGCCGGGATTACTCTCCGGCGCCACCTCGCCTCCGCTTCCCACCACCGGATTCGCCCTCCTGAGCGGAGAATCGAAGACGTTAAAAATCCCGAAATCTTGGTCTGGTCGGATATGGGCACGGACCCTCTGCGGTCAAGACTCGGACGGAAAGTTCTCTTGCGGCACCGCCGACTGCGGCTCCGGCAAAGTAGAGTGCGTCGGCGGTGCCAAGCCGCCGGCGACATTGGCAGAGCTCACCCTGAACGGCGCAGACGGGCTGGACTTCTACGACGTGAGCTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTGGCGAAGGACGGCACCAGGGGCGGGTGCAGTCCCACGGGGTGTCTCGTCGACCTCAACGGCGGGTGTCCGGCGGAGCTAAGGGTGGCACGCGTGAACGGCAGCCACAAGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGTGATCCTAGTTTTTGCTGCAGCGGCGCGTACGCGACGCCTGACACGTGTGGTCCCTCTCCTTATTCGCTGTTCTTCAAGCACGCATGCCCACGCGCGTATAGCTACGCGTATGATGACAAGACGAGCACCTACACATGTGCCTCCGCGAACTATTTGATCATTTTCTGCCCCTTGCCCTACACCAGCCAGAAAGTTTTGGGAGCACGAAAAGATGGGGCACAACTTCCTCTGGTAAACAAAACTATGATGTACTTATCAAGGCTTCAGTCAAGTGGTTCTTCGCCATTAGTTGTGGTTCAAACGCAGAGCATAGCTTATGTTGCCTCTGTTTTAGTGGCTCTGTTCCTGTTCTGCCCTCTCTAA 933 0.5681 MGRWLLFLIILSLVALTFLSEVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFALLSGESKTLKIPKSWSGRIWARTLCGQDSDGKFSCGTADCGSGKVECVGGAKPPATLAELTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSPTGCLVDLNGGCPAELRVARVNGSHKSVACRSACEAFGDPSFCCSGAYATPDTCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCASANYLIIFCPLPYTSQKVLGARKDGAQLPLVNKTMMYLSRLQSSGSSPLVVVQTQSIAYVASVLVALFLFCPL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01587 310 CDD TLP-PA 26 246 - -
Vian5g01587 310 PANTHER OS03G0233200 PROTEIN 11 247 IPR001938 -
Vian5g01587 310 Gene3D Thaumatin 25 247 IPR037176 -
Vian5g01587 310 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Vian5g01587 310 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Vian5g01587 310 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Vian5g01587 310 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Vian5g01587 310 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Vian5g01587 310 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Vian5g01587 310 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vian5g01587 310 Pfam Thaumatin family 31 247 IPR001938 -
Vian5g01587 310 SMART tha2 27 247 IPR001938 -
Vian5g01587 310 PIRSF PR5 1 300 IPR001938 -
Vian5g01587 310 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Vian5g01587 310 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01587 Vian-Chr5 38412496 38414097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01587 5 247 Receptor kinase-like Gene Family AT5G38280 51.220 3.46e-84 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01587 - - gmx:100802252 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01587 5 38412496 38414097 Vian5g01587 5 38412496 38414097 ECH
Vian5g01587 5 38412496 38414097 Vian1g01847 1 21932520 21933274 ECH