Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01847 ATGCTGGTTGAGCCACGGGGGAAACTGCACCGCGACGGGATGCGCGGTGGACTTGAACGGAGGGTGTCCGGCGGAGCTGAAGGTGAAGGCGGCATCGATGGGCCCTATGCGACGCCTGAGACATGCAAGGCGAGCTCTTACTCGGAGTTGTTGAAGAGCGCGTGCCCACGCGCCTATAGCTTTGCATACGATGATGCCACCAGCACCTTCACTTGTGCCTCGGCGAATTATCTCATCACTTTCTGTCCCTCCTCCACCAAAAGGTCGATAAAATCAGGAAATGGAAAATTCCCAGTTGCAGTAGATATCTCAGTTGGGCATGGTTATGGTGAGAAGTCACCGAAGCTAATGATATTAGGTCTTGCGACTGTTTTATTAACAATATGGTGGGAACTGAGTTAG 402 0.5224 MLVEPRGKLHRDGMRGGLERRVSGGAEGEGGIDGPYATPETCKASSYSELLKSACPRAYSFAYDDATSTFTCASANYLITFCPSSTKRSIKSGNGKFPVAVDISVGHGYGEKSPKLMILGLATVLLTIWWELS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01847 133 SMART tha2 3 83 IPR001938 -
Vian1g01847 133 SUPERFAMILY Osmotin, thaumatin-like protein 36 84 IPR037176 -
Vian1g01847 133 Pfam Thaumatin family 34 83 IPR001938 -
Vian1g01847 133 MobiDBLite consensus disorder prediction 1 18 - -
Vian1g01847 133 Gene3D Thaumatin 23 83 IPR037176 -
Vian1g01847 133 ProSiteProfiles Thaumatin family profile. 34 83 IPR001938 -
Vian1g01847 133 PANTHER OS03G0233200 PROTEIN 33 83 IPR001938 -
Vian1g01847 133 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01847 Vian-Chr1 21932520 21933274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01847 34 95 Receptor kinase-like Gene Family AT5G38280 46.970 2.61e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01847 - - gmx:100809419 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01847 1 21932520 21933274 Vian1g01847 1 21932520 21933274 ECH
Vian5g01587 5 38412496 38414097 Vian1g01847 1 21932520 21933274 ECH