Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01511 ATGTCTAGTTTGCGAATTTCTTGTCTTCCTTTTGAAACTTCTGTGAGGAATTTGGGTTATGCAAAAACAGGTGCTGAGATGGAATACTCAGAGGATGATAAGAAAACAAAGCTTGGCTCTTTAAAGAAGGTAGCAATCAGTGCATCTTCAAAGTTCAAGCATTCCTTGCAAAAGAAGGGGAGAAGGCATAGCAGGGTTATGTCTATTGCAATTGAGGATGAAGTTGATGCAGAAGAGTTGCAATCAGTTGATGCTTTTCGCCAAACACTCATCTTAGAAGAGCTATTACCCTCAAAGCATGATGATCATCATATGATGTTAAGATTCTTGAGAGCAAGAAAATATGAAATCGAGAAAACAAAACAAATGTGGGCAGATATGCTTCAGTGGAGGAGGGAGTTTGGTGCTGACACAATTCTGGAGGATTTTGAATTCAAGGAGTTAGAAGAAGTCCTAAAATACTACCCGCAAGGGCATCATGGAGTTGATAAGCAAGGGCAACCTGTTTACATAGAAAGGTTGGGTCAGGTTGACTCTAACAAGCTGTTGCAAGTCACAACTTTGGATCGCTATCTTAAGTACCATGTGAGAGAGTTTGAGAGGACATTCGCTGTTAAGTTCCCTGCTTGTTCCATTGCAGCCAAGAAACACATTGACCAAAGCACAACAATCTTGGATGTGCAAGGAGTGGGTCTCAAAAGTATGAACAAAGCTGCAAGGGATCTCATCCAACGTCTTCAGAAGATTGATGGTGACAACTACCCTGAGACCTTAAACCGTATGTTCATCATTAATGCTGGTTCAGGATTTAGGCTGTTGTGGAACACTGTCAAGTCATTCCTTGATCCTAAGACCACCGCCAAAATCCATATGGTTCAAAATGGAGCAGGAAAGTGCAAGAGGAAAACTTTATCTGGGATCGAAGTGAAAACCATAATTGAAGATGATACAGAATGCCAAAAGGAATGCGATTCTTTTAAAGAATCTGCAGCCATGGAGGATCCCTGTTCTGCTCCAGAAGTGGCATTTGCCCCAGTGAATTCATCTTGGGAAAAAGCAGAACAAAAAGATCAGTTAGCCCTTTCTAAAAATTGTTTGTCTAGCAACAGTAATTCTAATAAGTTTAGAATCCCTTTTACTGGTGGAATCATGTCCGTTCTTATGGCAGTGATAACAGTTATCCGCCTGGCAAAGAAAGTGCCAAGAAAAATCACTGGAACTGACTTGTTTAGTAACACAGCACATAGTAATGGTAACAAAATGAAAGCACCTGCAATTTGCATGGATGATCAAATGTCCATGATGAAGCGCATGGTTGAACTAGAAGAGAAGGTGAATATCCTCTCTAAGAAACCTGACATACCAGCTGAGATGGAAGAATTGCTGAATAAGGCTCTTAGCAGAATCAGTACGCTAGAACAAGACTTGGCTATTACCAAAAAGGTATTATTGGTTTTCCTTCATACTACAACCTCATCATCATTTGAGAATAACATTGATTGA 1503 0.4025 MSSLRISCLPFETSVRNLGYAKTGAEMEYSEDDKKTKLGSLKKVAISASSKFKHSLQKKGRRHSRVMSIAIEDEVDAEELQSVDAFRQTLILEELLPSKHDDHHMMLRFLRARKYEIEKTKQMWADMLQWRREFGADTILEDFEFKELEEVLKYYPQGHHGVDKQGQPVYIERLGQVDSNKLLQVTTLDRYLKYHVREFERTFAVKFPACSIAAKKHIDQSTTILDVQGVGLKSMNKAARDLIQRLQKIDGDNYPETLNRMFIINAGSGFRLLWNTVKSFLDPKTTAKIHMVQNGAGKCKRKTLSGIEVKTIIEDDTECQKECDSFKESAAMEDPCSAPEVAFAPVNSSWEKAEQKDQLALSKNCLSSNSNSNKFRIPFTGGIMSVLMAVITVIRLAKKVPRKITGTDLFSNTAHSNGNKMKAPAICMDDQMSMMKRMVELEEKVNILSKKPDIPAEMEELLNKALSRISTLEQDLAITKKVLLVFLHTTTSSSFENNID 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01511 500 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 26 484 - -
Vian5g01511 500 Pfam CRAL/TRIO, N-terminal domain 99 126 IPR011074 -
Vian5g01511 500 Gene3D - 135 329 IPR036865 -
Vian5g01511 500 Pfam CRAL/TRIO domain 153 294 IPR001251 -
Vian5g01511 500 SMART CRAL_TRIO_N_2 102 127 IPR011074 -
Vian5g01511 500 SUPERFAMILY CRAL/TRIO domain 147 294 IPR036865 -
Vian5g01511 500 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 147 316 IPR001251 -
Vian5g01511 500 SMART sec14_4 147 316 IPR001251 -
Vian5g01511 500 Gene3D - 65 134 - -
Vian5g01511 500 SUPERFAMILY CRAL/TRIO N-terminal domain 73 143 IPR036273 -
Vian5g01511 500 CDD SEC14 148 298 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01511 Vian-Chr5 37684485 37687430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01511 81 298 Acyl Lipid Metabolism Gene Families AT5G47730 25.991 2.49e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01511 K26544 - gmx:100792335 667.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01511 5 37684485 37687430 Vian5g01511 5 37684485 37687430 ECH
Vian5g01511 5 37684485 37687430 Vian1g01793 1 21124685 21128775 ECH