Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01793 ATGCAGGGCATTTGGGAGTGCAACGTTATTTCTGCTAATTCGTATGACGAGCAAGTAATTCTCCTGAATACCCTGCAGAAGCTAAACACGAAGCCGAACCATGTCTGGACCGCTATCTCCCAAGACATGTCAGTTTCATCTCCATCATTCTTTCTTTCTAAACTTGGTAAAAATGCTAAGCCAATTCTTGTTGATGGTGGCATTGCAGCTCTTGATCGTGTTGGTTCATTGAAGAAGAAGTTGAGGAATTCCTTGACAAGGAGTAGGAGAAGAAGCAGCAGCAAGGTCATGTCGATTGAAATCGAGGATATCCGCGATGCTGAAGAATCCAAAGCCGTAGATGAGTTCCGTCAGGCTCTTCTCTTGGACGAGCTCCTCCCAGATAAGCACGATGATTATCACATGATGCTCAGGTTCCTTAAGGCCAGGAAATTTGACCTTGAGAAATCTAAGCAAATGTGGTCTGACATGCTTCAATGGAGGAAGGAATTTGGTGCTGACACCATCACCGAGGACTTTGAATTCAAGGAACTCGATGAAGTGTTGCAATATTATCCTCATGGGCATCATGGAGTCGATAAAGATGGGCGACCAGTATACATCGAGAGATTGGGCCAAGTCGATGCCACCAAGTTGATGCAAGTCACAACCATGGAGCGATATATCAAATACCATGTCAAAGAGTTCGAGAGAACATTTGATGTGAAATTCGCAGCTTGCTCCATTGCTGCAAAGAAACACATCGATCAAAGTACAACCATCCTTGATGTGCAAGGAGTGGGCCTTAAGAGCTTTAACAAGCATGCCAGGGAGCTGATCACATCCCTTCAGAAGATTGACGGAGACAACTATCCTGAAACCTTGAACCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGGGCACTGTTAAATCCTTCCTTGACCCAAAGACCACATCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGAGAGTGAGTTGCCAGAGTTTTTGGGAGGCAAATGCACTTGTGCCGATCAAGGAGGCTGCATGCGCTCTGATAAGGGCCCTTGGAAGGATGAAGAAATAATCAGGATGGTTCAAAATGGTGAGCACAAATGTTCAAGGAAATGTGAGGCTCCAGTCATGGAAGACAAGACAACTTCTGAGGAACACGAGATTATCAAGTTGGAAGCAAATCTCACCCCACAATTGTCTTCTGCCTTTGCTGAGGCTGCTCCTTCCAAGAGTTACCAATACGAGGACTTTGTCCCCGCAGCTGAAAAAACTGCCTGGAAGAAGGTAGAAGACAACGACCGATATGCAGTATCGAAAGCTGATTCATACGCCATGGATTCTTTCAATATCCACGAGAGAGTAAACTCACAAATTTTCACTGGCGTGATGGCCTTCGTGATGGGCATAGTGACAATGGTGAGGATGACCAGGAACATGCCGAAGAAGCTCACAGACGCCAACTTCTACTCCAACTTCGGTGGTGAATACAAGGGGCAGGCCAATAACGAACAAATGACCGTCCCTGCAATCTCTGCTCAAGAGTTCATGACTGTGATGAAGCGCATGGCTGAGTTGGAAGAGAAAATGAGCAACATGAACAACCTCGCCATCTGCATGCCACCTGAGAAGGAGGAAATGCTCAATGCTGCCATCACCCGAGCAGATGCATTGGAGCAAGAACTCATGGCAACCAAAAAGGCTTTGGAGGAGTCCCTTTCTAAGCAAGAGGAGCTTTCGGCTTACGTTGAGAAGAAGAAGAAGAAGAAGTTGTTGTTCGTTTGGTAA 1818 0.4554 MQGIWECNVISANSYDEQVILLNTLQKLNTKPNHVWTAISQDMSVSSPSFFLSKLGKNAKPILVDGGIAALDRVGSLKKKLRNSLTRSRRRSSSKVMSIEIEDIRDAEESKAVDEFRQALLLDELLPDKHDDYHMMLRFLKARKFDLEKSKQMWSDMLQWRKEFGADTITEDFEFKELDEVLQYYPHGHHGVDKDGRPVYIERLGQVDATKLMQVTTMERYIKYHVKEFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKSFNKHARELITSLQKIDGDNYPETLNRMFIINAGSGFRMLWGTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDESELPEFLGGKCTCADQGGCMRSDKGPWKDEEIIRMVQNGEHKCSRKCEAPVMEDKTTSEEHEIIKLEANLTPQLSSAFAEAAPSKSYQYEDFVPAAEKTAWKKVEDNDRYAVSKADSYAMDSFNIHERVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNFGGEYKGQANNEQMTVPAISAQEFMTVMKRMAELEEKMSNMNNLAICMPPEKEEMLNAAITRADALEQELMATKKALEESLSKQEELSAYVEKKKKKKLLFVW 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01793 605 Gene3D - 87 164 - -
Vian1g01793 605 Coils Coil 558 589 - -
Vian1g01793 605 SMART CRAL_TRIO_N_2 132 157 IPR011074 -
Vian1g01793 605 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 74 597 - -
Vian1g01793 605 SMART sec14_4 177 348 IPR001251 -
Vian1g01793 605 FunFam SEC14 cytosolic factor 165 377 - -
Vian1g01793 605 SUPERFAMILY CRAL/TRIO domain 177 373 IPR036865 -
Vian1g01793 605 Pfam CRAL/TRIO domain 183 345 IPR001251 -
Vian1g01793 605 Pfam CRAL/TRIO, N-terminal domain 121 156 IPR011074 -
Vian1g01793 605 Coils Coil 526 546 - -
Vian1g01793 605 Gene3D - 165 377 IPR036865 -
Vian1g01793 605 CDD SEC14 178 346 IPR001251 -
Vian1g01793 605 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 177 351 IPR001251 -
Vian1g01793 605 SUPERFAMILY CRAL/TRIO N-terminal domain 106 173 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01793 Vian-Chr1 21124685 21128775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01793 111 342 Acyl Lipid Metabolism Gene Families AT5G47730 27.642 1.18e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01793 K26544 - gmx:100785716 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01793 1 21124685 21128775 Vian1g01793 1 21124685 21128775 ECH
Vian5g01511 5 37684485 37687430 Vian1g01793 1 21124685 21128775 ECH