Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01433 ATGAACAAGCGCCAAGAAGATGAGCGTAACACAGCTGCTACCCTCGACTCCAGGTTGAATCAGACCCTCAAAAATGTTCAAGGGTTACTCAAGGGTCGCAGCATTCCCGGTAAAATATTATTGAGTCGTAGGTCAGATCCTCCGGATAGCTCAAACTCAAAGATGTCAAATAACCCAAACTCAAAGATATCCTCACCAAGTTACAAGAGGAGCTTTTCTCACAATGATGCTGGTCCAAGTGATCATACATCTGGGGCAGTAGAGGAGGAATTTCCGAGTACAAACAAACCAATTAGTATTGCCAATGCCAGTAAGCTAAAAGTGTCGACTTCCTTTGGAAGCAACCAGCCTGAAGAAATCCGCAAGTCTATCGTGGGTGCTAGATCTACAGACTCTGCAAGAGTTATGAAGTTCACTAAGGTCCTCTCCGAGACAGTGGTTATATTAGATAGAAGGGAGGGAGTTCTAAGAAGGAAGCGAGTTGAGTATCTTGACTGTATATCTCAGTATTATGATATTCCAGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCGCCAGATTGGTGTTGATTGTCCAAGAACTGTACCTGATGTTCCATTCTTCCAGCAACCGCAAGTTCAGAAATCATTGGAACGTATTCTTTATGCATGGGCCATTCGCCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCGTTCTTGGTTGTTTTCTTATCAGAGTATTTTGAAGGGGATATAGATAATTGGTCAATGTCTGATTTATCTCCAGATACAATCTCTAATGTAGAGGCAGACTGCTACTGCTGCTTGTCAAAGTTGCTTGATGGTATGCAAGATCATTACACATTCGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCACGAGGATTGATGCTGCACCAGAGCCTGTTTCGCTGCACTTGGAGGATCAGGGACTTGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGTCTTCTCATCCGTGAGTGGTCTGACAAGCTCCAGAAATTTGATTTCCAAGAATTGGTAATGTTCCTTCAGAACCTCCCGACAGAGAATTGGACTCACCAGGAGCTTGAGATGGTGCTTTCACGAGCATTTATGTGGCACACCATGTTCAACAACTCTCCCAGCCATTTAATTAGCTAA 1185 0.4329 MNKRQEDERNTAATLDSRLNQTLKNVQGLLKGRSIPGKILLSRRSDPPDSSNSKMSNNPNSKISSPSYKRSFSHNDAGPSDHTSGAVEEEFPSTNKPISIANASKLKVSTSFGSNQPEEIRKSIVGARSTDSARVMKFTKVLSETVVILDRREGVLRRKRVEYLDCISQYYDIPDTERSDDEVNMLRQIGVDCPRTVPDVPFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFLSEYFEGDIDNWSMSDLSPDTISNVEADCYCCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVTRIDAAPEPVSLHLEDQGLEFLQFAFRWFNCLLIREWSDKLQKFDFQELVMFLQNLPTENWTHQELEMVLSRAFMWHTMFNNSPSHLIS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01433 394 Gene3D - 290 342 - -
Vian5g01433 394 Gene3D - 343 394 - -
Vian5g01433 394 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 115 345 - -
Vian5g01433 394 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 147 309 IPR035969 -
Vian5g01433 394 SMART tbc_4 125 369 IPR000195 -
Vian5g01433 394 ProSiteProfiles TBC/rab GAP domain profile. 172 360 IPR000195 -
Vian5g01433 394 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 165 289 - -
Vian5g01433 394 MobiDBLite consensus disorder prediction 45 80 - -
Vian5g01433 394 MobiDBLite consensus disorder prediction 27 95 - -
Vian5g01433 394 Pfam Rab-GTPase-TBC domain 162 344 IPR000195 -
Vian5g01433 394 FunFam TBC1 domain family, member 22B 159 289 - -
Vian5g01433 394 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 291 382 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01433 Vian-Chr5 36967347 36979309 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01433 K20360 - gmx:100819281 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00275 11 2596754 2602048 Vian5g01433 5 36967347 36979309 PCT