Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00275 ATGAAGAACGACCACGACGACAACAACAAGAACAAAGCCGAACGCAGCAAAGACACTGCTGTGGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTGAGCCAGAGGGTTAGTTCTCCAGATTACTCAAGCTTACCCTCACCAACTTATACAAGGAGCCCCTCATACAGTGATACTAGAACAAGTGGCCACATATCTGAGAGAATAGAGAAGGAAGCTCAGAGTACAAGGAAACCATTTGGTACTCCCAATGAGAATAAGTTGAAAGTATCAGCATCCAATGTAGAGAGCCCGTCTGAAGAAGTACATAAATCTTCATTGGGTGCTAGAGCTACAGATTCTGCTAGGGTATTGAAATTCAGTAAGGTGCTTTCTGGGACGATGGTTGTATTAGAGAAATTGCGTGAATTATCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCAACTAATTCAGATAGAAGGGAAGGAGTTTTGAGAAGAAAGCGTCTTGAGTATCTTGACTATGTTTCTCAGTATTATGATATTCCTGATGCAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCGAGAACTGTACCTGAAGTGTCATTCTTTCAGCAAGAGCAAGTTCAAAAATCATTGGAGCGTATTCTTTACACATGGGCCATCCGGCATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACCTAGAAGGGGCCATAGATAATTGGTCAATGTCTAGTTTATCTTCGGATCAAATCTCTAATGTAGAGGCCGACTGCTATTGGTGTTTGTCAAAGTTGCTTGACGGCATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGGAGCAAGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATTCGAGAGGTACCCTTCCATTTGGTCACACGTCTTTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGATCAGCTCCAGAGGTTTGATTTCCAAGAATTGGTAATGTTTCTTCAACACCTTCCAACTAAGAATTGGACGCACCAGGAGCTCGAGATGGTACTTTCTCGTGCGTTTATGTGGCACAGCATGTTCAACAGTTGTCCGAGTCATTTAGCTAACTGA 1368 0.4262 MKNDHDDNNKNKAERSKDTAVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVSSPDYSSLPSPTYTRSPSYSDTRTSGHISERIEKEAQSTRKPFGTPNENKLKVSASNVESPSEEVHKSSLGARATDSARVLKFSKVLSGTMVVLEKLRELSWSGVPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDYVSQYYDIPDAERSDDEINMLRQIAVDCPRTVPEVSFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGAIDNWSMSSLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMEEQGLEFLQFAFRWFNCLLIREVPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDQLQRFDFQELVMFLQHLPTKNWTHQELEMVLSRAFMWHSMFNSCPSHLAN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00275 455 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 111 428 - -
Vian11g00275 455 SMART tbc_4 155 411 IPR000195 -
Vian11g00275 455 MobiDBLite consensus disorder prediction 94 118 - -
Vian11g00275 455 Gene3D - 136 186 - -
Vian11g00275 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 139 345 IPR035969 -
Vian11g00275 455 ProSiteProfiles TBC/rab GAP domain profile. 158 385 IPR000195 -
Vian11g00275 455 FunFam TBC1 domain family member 132 184 - -
Vian11g00275 455 FunFam TBC domain containing protein 188 319 - -
Vian11g00275 455 FunFam TBC domain containing protein 320 455 - -
Vian11g00275 455 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 321 443 IPR035969 -
Vian11g00275 455 MobiDBLite consensus disorder prediction 54 124 - -
Vian11g00275 455 Gene3D - 320 455 - -
Vian11g00275 455 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 194 319 - -
Vian11g00275 455 Pfam Rab-GTPase-TBC domain 162 406 IPR000195 -
Vian11g00275 455 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00275 Vian-Chr11 2596754 2602048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00275 K20360 - gmx:100785695 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00275 11 2596754 2602048 Vian11g00275 11 2596754 2602048 ECH
Vian11g00275 11 2596754 2602048 Vian5g01433 5 36967347 36979309 PCT