Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01415 ATGGAGGCGATGGACATGAGGCGCGTGTTCGAGATGTTCGATCGGAACGGGGATGGGCGAATATCGGCGAAGGAGCTGAGAGATTCGTTGGTGAATTTGGGGATAGAGATTCCGGAGAAGGAGCTGGCGGAGATGATCGAGAGGATCGACGTCAACGGCGACGGCTGCGTGGATATGGCGGAGTTCGGGGAGCTGTACGAGACGATAATGGAGGGGCGCGACGATGAGGAGGACATGCGGGAGGCCTTCAACGTCTTCGACCAGAACCGCGATGGCTTCATCACCGTCGACGAGCTCCGCGCCGTGCTGGCCTCCTTGGGCCTCCAACAAGGGAGGAGCTTGGAGGAGTGCCGGAAGATGATCGTGAAAGTGGACGTTGACGGAGATGGCATGGTGAATTACAAGGAATTCAGGCAAATGATGAAGGGTGGTGGAGGATTCACTGCTCTTGGTTAA 456 0.5702 MEAMDMRRVFEMFDRNGDGRISAKELRDSLVNLGIEIPEKELAEMIERIDVNGDGCVDMAEFGELYETIMEGRDDEEDMREAFNVFDQNRDGFITVDELRAVLASLGLQQGRSLEECRKMIVKVDVDGDGMVNYKEFRQMMKGGGGFTALG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01415 151 Gene3D - 69 144 - -
Vian5g01415 151 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Vian5g01415 151 FunFam Calmodulin 1 3 143 - -
Vian5g01415 151 SUPERFAMILY EF-hand 5 142 IPR011992 -
Vian5g01415 151 PRINTS Parvalbumin signature 124 137 - -
Vian5g01415 151 PRINTS Parvalbumin signature 65 83 - -
Vian5g01415 151 PRINTS Parvalbumin signature 87 103 - -
Vian5g01415 151 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Vian5g01415 151 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vian5g01415 151 CDD EFh 78 142 IPR002048 GO:0005509
Vian5g01415 151 Gene3D - 2 68 - -
Vian5g01415 151 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Vian5g01415 151 Pfam EF-hand domain pair 5 66 IPR002048 GO:0005509
Vian5g01415 151 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Vian5g01415 151 SMART efh_1 41 69 IPR002048 GO:0005509
Vian5g01415 151 SMART efh_1 116 144 IPR002048 GO:0005509
Vian5g01415 151 SMART efh_1 5 33 IPR002048 GO:0005509
Vian5g01415 151 SMART efh_1 78 106 IPR002048 GO:0005509
Vian5g01415 151 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Vian5g01415 151 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Vian5g01415 151 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Vian5g01415 151 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Vian5g01415 151 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01415 Vian-Chr5 36810386 36810841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01415 1 150 EF-hand Containing Proteins AT1G05990 70.199 8.11e-71 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01415 K13448 - gmx:100796922 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00301 11 2817685 2818332 Vian5g01415 5 36810386 36810841 PCT