Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00301 ATGCCAACTATTATGCTAAGGTTTTTTCTTCTTTACAACCTCCTTCGTCCATTTCTTCTGTGTCTGGTTCCTAAGAAGGTGCGAGCCATTCTCTCTCCTTCTTGGTTCCGATCCTCCTCCACCACAGCACCAACACCAACACAACCATCTTCTTCTTCTTCTTCTTCGAGTGCCTTCACCAGAATTTCACTCTCGATGGATCCCAACGAGCTGAAGCGCGTGTTTCAGATGTTCGACCGTAATGGCGACGGGAGAATCACGAAGAAGGAGCTGAGCGACTCGTTGGACAATCTGGGCATTTTCATTCCCGACAAGGAGCTGACCGTGATGATCGAGAGAATAGACGTTAACGGAGATGGGTGTGTGGACATCGATGAGTTCGGGGAGCTCTACCAGACGATCATGGACGAGCGTGACGAGGAGGACGACATGCGAGAGGCCTTCAACGTGTTTGATCAGAACGGCGATGGCTTCATCACCGTGGAAGAGTTGAGGACCGTTTTGTCCTCGCTCGGGTTGAAACAGGGAAGAACAGTCGAGGACTGCAAGAAGATGATCATGAAGGTGGACGTCGATGGAGATGGGATGGTCGATTACAAAGAGTTCAAGCAAATGATGAAAGGGGGTGGCTTTAGTGCTCTCACTTGA 648 0.5 MPTIMLRFFLLYNLLRPFLLCLVPKKVRAILSPSWFRSSSTTAPTPTQPSSSSSSSSAFTRISLSMDPNELKRVFQMFDRNGDGRITKKELSDSLDNLGIFIPDKELTVMIERIDVNGDGCVDIDEFGELYQTIMDERDEEDDMREAFNVFDQNGDGFITVEELRTVLSSLGLKQGRTVEDCKKMIMKVDVDGDGMVDYKEFKQMMKGGGFSALT 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00301 215 ProSiteProfiles EF-hand calcium-binding domain profile. 102 137 IPR002048 GO:0005509
Vian11g00301 215 ProSitePatterns EF-hand calcium-binding domain. 79 91 IPR018247 -
Vian11g00301 215 FunFam Calmodulin-like protein 5 49 140 - -
Vian11g00301 215 ProSiteProfiles EF-hand calcium-binding domain profile. 66 101 IPR002048 GO:0005509
Vian11g00301 215 SMART efh_1 181 209 IPR002048 GO:0005509
Vian11g00301 215 SMART efh_1 70 98 IPR002048 GO:0005509
Vian11g00301 215 SMART efh_1 143 171 IPR002048 GO:0005509
Vian11g00301 215 SMART efh_1 106 134 IPR002048 GO:0005509
Vian11g00301 215 ProSitePatterns EF-hand calcium-binding domain. 152 164 IPR018247 -
Vian11g00301 215 ProSiteProfiles EF-hand calcium-binding domain profile. 177 212 IPR002048 GO:0005509
Vian11g00301 215 PRINTS Parvalbumin signature 152 168 - -
Vian11g00301 215 PRINTS Parvalbumin signature 130 148 - -
Vian11g00301 215 PRINTS Parvalbumin signature 189 202 - -
Vian11g00301 215 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 142 207 - -
Vian11g00301 215 SUPERFAMILY EF-hand 69 209 IPR011992 -
Vian11g00301 215 Gene3D - 41 141 - -
Vian11g00301 215 Pfam EF-hand domain pair 142 207 IPR002048 GO:0005509
Vian11g00301 215 Pfam EF-hand domain pair 70 132 IPR002048 GO:0005509
Vian11g00301 215 FunFam calmodulin-like protein 3 141 210 - -
Vian11g00301 215 ProSitePatterns EF-hand calcium-binding domain. 190 202 IPR018247 -
Vian11g00301 215 CDD EFh 143 207 IPR002048 GO:0005509
Vian11g00301 215 ProSiteProfiles EF-hand calcium-binding domain profile. 139 174 IPR002048 GO:0005509
Vian11g00301 215 ProSitePatterns EF-hand calcium-binding domain. 115 127 IPR018247 -
Vian11g00301 215 MobiDBLite consensus disorder prediction 37 59 - -
Vian11g00301 215 Gene3D - 142 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00301 Vian-Chr11 2817685 2818332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00301 5 213 EF-hand Containing Proteins AT2G43290 63.551 4.39e-92 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00301 K13448 - gmx:100527487 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00301 11 2817685 2818332 Vian11g00301 11 2817685 2818332 ECH
Vian11g00301 11 2817685 2818332 Vian5g01415 5 36810386 36810841 PCT