Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01406 ATGGCTGTCAAACTTGAAGAAGAGGACCGTTTTCCATCAACCCAGGATCACAAGGTTCTGGCTACACAGAAGTTTGGCCTTCCAGAAATTGAAGAATTTGCGTACTGTGGAGCAAATAAATTGACTCGGCGCGTGAAATCTGAAATGGAATCAGACGGTGCTTCAGTGACAAGTGAAGTTGGTTCAACTAGACCTGGTGGTGAATCACCTGCCCACTGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTCTTCTGGTGATGCACCAGTGGATACTATGGGATGTGAGAAAGCTGGTGATACACTACCTCCTAAGGAGAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCTAGCCAAACAAAGGATCATGTTACTCATGGAGCAATTCAACGCCTTCTTCAAAGTGATCTGCTTACAGCTGAAGCTATCAATAATGTTGATGAAGAGACTGTCAAGAAGTTGATCTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAAATATTTGTCTCATGAAGTACAATGGAGACATACCAAGCTCAATTGAACAACTACTGTTACTTCCAGGCATCGGTCCTAAGATGGCTCATTTGGTTATGAATTCTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGGCTTGGGTGGGTCTCAAGATTGGGCACAAAACAGAAAACTTCAACACCTGAAGAGACAAGAGAGTCTCTGCAACGGTGGCTTCCAAAGGAAGAATGGATTCCAATAAACCCTCTCTTGGTAGGGTTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCATTGTAAGAGACTTGTGTCCCTCTGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCCAAGCCCAAAAAGCCCGGGCTAAACAAGAAGCCTTAA 954 0.4392 MAVKLEEEDRFPSTQDHKVLATQKFGLPEIEEFAYCGANKLTRRVKSEMESDGASVTSEVGSTRPGGESPAHWEKVLEGIRKMRSSGDAPVDTMGCEKAGDTLPPKERRFAVLVSSLLSSQTKDHVTHGAIQRLLQSDLLTAEAINNVDEETVKKLIYPVGFYTRKATNLKKIANICLMKYNGDIPSSIEQLLLLPGIGPKMAHLVMNSGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETRESLQRWLPKEEWIPINPLLVGFGQTICTPLRPRCGECIVRDLCPSAFKETSNSSPSSKPKKPGLNKKP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01406 317 Hamap Endonuclease III-like protein 1 [NTHL1]. 69 298 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Vian5g01406 317 Pfam HhH-GPD superfamily base excision DNA repair protein 114 255 IPR003265 GO:0006284
Vian5g01406 317 MobiDBLite consensus disorder prediction 48 71 - -
Vian5g01406 317 Gene3D - 207 298 IPR023170 -
Vian5g01406 317 SMART ccc3 275 295 IPR003651 GO:0051539
Vian5g01406 317 SUPERFAMILY DNA-glycosylase 82 308 IPR011257 GO:0003824|GO:0006281
Vian5g01406 317 ProSitePatterns Endonuclease III family signature. 183 212 IPR004036 -
Vian5g01406 317 SMART endo3end 118 274 IPR003265 GO:0006284
Vian5g01406 317 Gene3D Hypothetical protein; domain 2 103 206 - -
Vian5g01406 317 FunFam Endonuclease III homolog 208 298 - -
Vian5g01406 317 MobiDBLite consensus disorder prediction 296 317 - -
Vian5g01406 317 Pfam Iron-sulfur binding domain of endonuclease III 276 292 IPR003651 GO:0051539
Vian5g01406 317 CDD ENDO3c 110 272 IPR003265 GO:0006284
Vian5g01406 317 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 276 292 IPR004035 -
Vian5g01406 317 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 9 308 - -
Vian5g01406 317 Pfam Helix-hairpin-helix motif 180 207 IPR000445 GO:0003677
Vian5g01406 317 FunFam Endonuclease III-like protein 1 105 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01406 Vian-Chr5 36704330 36713216 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01406 K10773 - gmx:100818398 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00305 11 2846640 2848201 Vian5g01406 5 36704330 36713216 PCT