Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00305 ATGAACAAAGCTGATGAAGAAACCATCAAAAAGTTGATTTACCCTGTTGGATTTTATACAAGAAAAGCCAGTTACTTGAAGAAGGTTGCTAACATTTGCCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTCGTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCACGTCCACCGCATTTGCAATCGTCTTGGGTGGGTTTCGAGATCAGGCTCAAAACAGAAAACTTTGACACCAGAAGAAACCAGACAAAGGCTGCAACTATGGCTTCCGAAGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGACGATCAATTTGTACTCCTCTACGACCTCACTGTGGAGAGTGTAGTGTGAGTAGCTTCTGTCCATCAGCATACAAGGAGGCTTCAAGCTTTTCATCCAAGTCCAAAAAATTTACATTGAACAAGAAGCCTTGA 516 0.4205 MNKADEETIKKLIYPVGFYTRKASYLKKVANICLMKYDGDIPSSIEELLLLPGVGPKIAHLVMIRGWNNVQGICVDTHVHRICNRLGWVSRSGSKQKTLTPEETRQRLQLWLPKEEWVPINPLLVGFGRSICTPLRPHCGECSVSSFCPSAYKEASSFSSKSKKFTLNKKP 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00305 171 Gene3D Hypothetical protein; domain 2 1 63 - -
Vian11g00305 171 Gene3D - 64 155 IPR023170 -
Vian11g00305 171 FunFam Endonuclease III homolog 64 154 - -
Vian11g00305 171 SMART ccc3 131 151 IPR003651 GO:0051539
Vian11g00305 171 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 1 164 - -
Vian11g00305 171 PIRSF Nth 1 157 - -
Vian11g00305 171 SUPERFAMILY DNA-glycosylase 2 154 IPR011257 GO:0003824|GO:0006281
Vian11g00305 171 SMART endo3end 1 130 IPR003265 GO:0006284
Vian11g00305 171 Pfam HhH-GPD superfamily base excision DNA repair protein 3 104 IPR003265 GO:0006284
Vian11g00305 171 CDD ENDO3c 1 128 IPR003265 GO:0006284
Vian11g00305 171 ProSitePatterns Endonuclease III family signature. 39 68 IPR004036 -
Vian11g00305 171 Pfam Helix-hairpin-helix motif 36 63 IPR000445 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00305 Vian-Chr11 2846640 2848201 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00305 K10773 - gmx:100805799 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00305 11 2846640 2848201 Vian11g00305 11 2846640 2848201 ECH
Vian11g00305 11 2846640 2848201 Vian5g01406 5 36704330 36713216 PCT