Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01272 ATGGAGCTTGATCTTTCTCCTCAATTGGCCAAGAAGGTGTACGAGAGCAATGGTGGATCTTACTATGCATGGTCTCCTTCTGAGCTTCCCATGTTGCGTGAAGGAAACATTGCTGCTGCGAAACTAGCTCTTCAGAAGAATGGTTTTGCCCTTCCTCAGTACTCTGACTCTTCCAAGGTTGCCTACGTTCTACAAGTGATTCAGTATTATGATTATTGGTTGATTTTAAATGTGAACTTGTGGGAAACAGGAAGTGGAGTTGCAGGAATTGTTCTCCCTGAATCACAAGAGAAGGTTGTTGCAATCAAAAAGGGTGATGCTTTGGCACTTCCTTTTGGTGTAGTGACATGGTGGTATAACAAGGAGGATACCGAGTTGGTAGTTCTGTTCCTGGGTGAAACATCAAAAGCCCACAAGACTGGTGAATTCACTGACTTTTTTCTGACTGGTGCCAATGGAATCTTCACTGGATTTTCAACTGAGTTTGTGGGGAGGGCTTGGGACTTGGAAGAAAAGGATGTGAAAGCCCTTGTTGGGAATCAATCAGGTAAGGGTATTGTGAAGGTTGAAGGAAATATCCAGCTTCCTGAGCCTCAAGAGGAGCATAGGAAGGGCATGGCATTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGAATGGTGGAAGGGTTGTGGTGTTGAACACCAAGAACCTTCCCTTGGTTGGTGAGGTTGGTCTGGGAGCAGACCTTGTGAGGTTGGATGGAAACGCCATGTGTTCTCCAGGATTCTCTTGTGATTCTGCATATCAGGTTACATACATTGTGAGGGGAAGTGGCCGTGCTCAGGTTGTTGGTGTGGATGGTCGTAGGGTTTTGGAGACAACTGTGAAAGCTGGAAATTTGTTCATTGTACCAAGGTTTTTTGTTGTGTCCAAGATTGCTGACTCTGATGGCCTCGAGTGGTTCTCTATCATCACTACCCCCAAAAGTATACTACTGATAACTGCTTTACTTGCCAATCATGATCCTGTATTTACTCACCTGGCTGGAAGTATTGGGGCATGGAAGGCTCTTTCACCATCGGTTCTGCAGGCAGCTTTCAATGTGGATGAAGAACTTGAGAAACTCTTTCGTTCAAAGAGGAATGCGGATGCCATTTTCTTCCCTCCTCCAAATTGA 1164 0.4527 MELDLSPQLAKKVYESNGGSYYAWSPSELPMLREGNIAAAKLALQKNGFALPQYSDSSKVAYVLQVIQYYDYWLILNVNLWETGSGVAGIVLPESQEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGETSKAHKTGEFTDFFLTGANGIFTGFSTEFVGRAWDLEEKDVKALVGNQSGKGIVKVEGNIQLPEPQEEHRKGMALNCEEAPLDVDIKNGGRVVVLNTKNLPLVGEVGLGADLVRLDGNAMCSPGFSCDSAYQVTYIVRGSGRAQVVGVDGRRVLETTVKAGNLFIVPRFFVVSKIADSDGLEWFSIITTPKSILLITALLANHDPVFTHLAGSIGAWKALSPSVLQAAFNVDEELEKLFRSKRNADAIFFPPPN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01272 387 CDD cupin_11S_legumin_N 4 191 - -
Vian5g01272 387 Gene3D Jelly Rolls 214 387 IPR014710 -
Vian5g01272 387 Gene3D Jelly Rolls 3 213 IPR014710 -
Vian5g01272 387 PRINTS 11-S seed storage protein family signature 312 330 IPR006044 GO:0045735
Vian5g01272 387 PRINTS 11-S seed storage protein family signature 294 309 IPR006044 GO:0045735
Vian5g01272 387 PRINTS 11-S seed storage protein family signature 229 249 IPR006044 GO:0045735
Vian5g01272 387 PRINTS 11-S seed storage protein family signature 276 292 IPR006044 GO:0045735
Vian5g01272 387 SUPERFAMILY RmlC-like cupins 12 377 IPR011051 -
Vian5g01272 387 Pfam Cupin 217 368 IPR006045 -
Vian5g01272 387 Pfam Cupin 10 65 IPR006045 -
Vian5g01272 387 Pfam Cupin 83 174 IPR006045 -
Vian5g01272 387 PANTHER OS03G0336100 PROTEIN-RELATED 8 386 - -
Vian5g01272 387 CDD cupin_11S_legumin_C 216 384 - -
Vian5g01272 387 SMART Cupin_1_3 3 175 IPR006045 -
Vian5g01272 387 SMART Cupin_1_3 213 370 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01272 Vian-Chr5 35512514 35514576 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01272 - - gmx:100782055 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00423 11 3946473 3949021 Vian5g01272 5 35512514 35514576 PCT