Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00423 ATGGAGATTGGTCTTTCTCCCAAGTTGGCGAAGAAAGTTTATGAAGGCGATGGTGGGTCTTACTTCGCCTGGTCCCCCTCTGAGCTTCCCATGCTTCGCGAAGGTAACATTGGTGCAGCCAAACTTTCTCTGCACAAAAATGGGTTCGCCCTTCCTCGATATTCTGACTCCTCTAAAGTCGCCTATGTTCTTCAGGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAATCAGAAGAGAAGGTTGTTGCAATCAAGAAGGGGGATGCGCTCGCACTCCCCTTTGGTGTTGTAACATGGTGGTATAACAAAGAAGAAACTGAGTTGATTGTTCTGTTTCTTGGGGACACTTCCAAGGCTCACAAGGCTGGTGAATTCACTGACTTTTTTCTGACTGGTTCCAATGGAATCTTCACGGGATTTTCCACTGAGTTTGTGGGCAGAGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCGGGCAAAGGGGTTGTGCAGTTGGAAGGAAGCATCACACTACCCGAGCCTAAATCAGAGCACCGGATTGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGATGTTGGGCTAGGGGCTGACCTTGTGAGGTTGGATGGAGGAGCCATGTGCTCTCCGGGATTCTCTTGTGATTCTGCTTTGCAGGTTACTTATATTGTTAGGGGTAGTGGCCGGGTTCAGGTTGTTGGAGTTGATGGTCATAGGGTTTTGGAGACAACCATAAAAGCTGGTAATTTGTTCATTGTGCCAAGGTTTTTTGTGGTCTCAAAAATTGCTGATCCAGAGGGAATGGAGTGGTTCTCTATAATCACCACCCCTAATCCTGTATTCACCCACTTGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCACCTTCTGTTCTGCAAGCTGCTTTCAATGTAGATTCAGGAGTGGAACAACTGTTCCGTTCAAAAAGGACTTCCGATGCTATTTTCTTCCCTCCACCAAATTAG 1071 0.4753 MEIGLSPKLAKKVYEGDGGSYFAWSPSELPMLREGNIGAAKLSLHKNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEETELIVLFLGDTSKAHKAGEFTDFFLTGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGKGVVQLEGSITLPEPKSEHRIGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGDVGLGADLVRLDGGAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGHRVLETTIKAGNLFIVPRFFVVSKIADPEGMEWFSIITTPNPVFTHLAGSSSVWKALSPSVLQAAFNVDSGVEQLFRSKRTSDAIFFPPPN 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00423 356 Pfam Cupin 199 335 IPR006045 -
Vian11g00423 356 Pfam Cupin 10 156 IPR006045 -
Vian11g00423 356 CDD cupin_11S_legumin_N 5 173 - -
Vian11g00423 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Vian11g00423 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Vian11g00423 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Vian11g00423 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Vian11g00423 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Vian11g00423 356 FunFam Glycinin G1 192 356 - -
Vian11g00423 356 SUPERFAMILY RmlC-like cupins 13 345 IPR011051 -
Vian11g00423 356 CDD cupin_11S_legumin_C 198 353 - -
Vian11g00423 356 Gene3D Jelly Rolls 4 194 IPR014710 -
Vian11g00423 356 PANTHER OS03G0336100 PROTEIN-RELATED 10 355 - -
Vian11g00423 356 Gene3D Jelly Rolls 195 356 IPR014710 -
Vian11g00423 356 SMART Cupin_1_3 195 339 IPR006045 -
Vian11g00423 356 SMART Cupin_1_3 3 157 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00423 Vian-Chr11 3946473 3949021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00423 35 347 Miscellaneous Gene Families AT2G18540 21.703 2.86e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00423 - - vra:106758740 687.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00423 11 3946473 3949021 Vian11g00423 11 3946473 3949021 ECH
Vian11g00423 11 3946473 3949021 Vian5g01272 5 35512514 35514576 PCT