Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01260 ATGGAGTTGCTCTATCTACTGTACCTCGTCCCAACGTTGTACTCATGTTTACTCATCTGGAAAATGTTGGAGGAGAGACGCGACAGGGAGTGTTACATCTTGAACTACCAATGCTACAAGCCCCCCAACGACCGCATGCTGGGCACCGAATTCTGTGGGAAACTCATCAAACGCTCCGAAAACTTGGGTCCCAACGAGTACCGTTTTCTGTTGAAGGCCATCGTCAGCTCCGGCATCGGCGAACAGACTTACGCGCCAAGAAACATCTTCGAGGGTAGAGAGGCAACGCCCACATTGCACGACAGCATCGAAGAGATGGAAGAGTTCTTCAACGACGCCATCGCCAAGCTTCTGGAAAAATCCAAAGTCTCCCCCTCCGAGATCGACATCCTCGTCGTCAACATCTCCATGCTCTCCACTGTCCCCTCCCTCTCCTCGCGTATCATCAACCGCTACAAGCTCCGCCACGACGTCAAGGTCTACAACCTCACCGGCATGGGTTGCAGCGCCAGCCTGATCTCCATGGACATTGTGAAAAACATCTTCAAGACGCAGAGGAACAAGATGGCGTTGTTGATCACCTCGGAGTCCCTCAGCCCCAACTGGTACACCGGCAACGACAGATCCATGATCCTCGCCAACTGCCTGTTCCGCTCCGGCGGCTGCGCGATTCTCTTGACCAACAAACGGTCCTTGAAGAACAGAGCCATCCTGCGGTTGAAGTGCCTGGTGAGGACGCACCACGGTGCCAGAGAAGAGGCTTACAATTGTTGTGTTCAGCGGGAAGATGACCAGGGAAGGCTAGGGTTTCACCTTGAGAAGACGCTTCCCAAGGCTGCCACGCGAGCCTTCGTTGATAATCTTCGAGTCATGGCACCCAAAATATTACCTGTCCGTGAGTTGCTCAGGTTTCTGTTCATGTCGCTTATTAAAAAAGTCAACAAGAACAACACTCCGAAGTCTGCGATCACCGGAGCTACAAAATCTCCGTTGAACTTCAGAACTGGGGTGGATCACTTTTGCTTGCATACCGGAGGAAAAGCCGTGATCGAAGGCATTGGAATGAGCTTGGATCTGAACGAGTACGACCTGGAACCGGCGAGGATGACGCTGCACCGGTTCGGAAACACGTCGGCGGGTAGCTTGTGGTACGTGTTATCATACATGGAAGCGAAGAAGAGGTTGAAGAAGGGTGACACGGTGTTCATGATAAGCTTTGGAGCAGGCTTTAAATGCAACAGCTGTTTGTGGGAGGTGATGAAAGACCTGGGAGACCCAAATGTGTGGGACGATTGCATTGATGACTACCCACCAGAGACACTGGACAACCCCTTCATGAAGACCTATGGTTGGATCAACGAGGTTGAAGACCCCAACACTTACGAAAATATCCCTGATTTTCTCAAGTGA 1410 0.5177 MELLYLLYLVPTLYSCLLIWKMLEERRDRECYILNYQCYKPPNDRMLGTEFCGKLIKRSENLGPNEYRFLLKAIVSSGIGEQTYAPRNIFEGREATPTLHDSIEEMEEFFNDAIAKLLEKSKVSPSEIDILVVNISMLSTVPSLSSRIINRYKLRHDVKVYNLTGMGCSASLISMDIVKNIFKTQRNKMALLITSESLSPNWYTGNDRSMILANCLFRSGGCAILLTNKRSLKNRAILRLKCLVRTHHGAREEAYNCCVQREDDQGRLGFHLEKTLPKAATRAFVDNLRVMAPKILPVRELLRFLFMSLIKKVNKNNTPKSAITGATKSPLNFRTGVDHFCLHTGGKAVIEGIGMSLDLNEYDLEPARMTLHRFGNTSAGSLWYVLSYMEAKKRLKKGDTVFMISFGAGFKCNSCLWEVMKDLGDPNVWDDCIDDYPPETLDNPFMKTYGWINEVEDPNTYENIPDFLK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01260 469 CDD CHS_like 17 417 - -
Vian5g01260 469 SUPERFAMILY Thiolase-like 19 231 IPR016039 GO:0016746
Vian5g01260 469 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vian5g01260 469 SUPERFAMILY Thiolase-like 243 420 IPR016039 GO:0016746
Vian5g01260 469 Pfam FAE1/Type III polyketide synthase-like protein 25 312 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vian5g01260 469 Gene3D - 71 419 IPR016039 GO:0016746
Vian5g01260 469 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 337 418 IPR013747 -
Vian5g01260 469 PANTHER 3-KETOACYL-COA SYNTHASE 19 438 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01260 Vian-Chr5 35358239 35359648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01260 19 466 Acyl Lipid Metabolism Gene Families AT2G28630 68.271 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01260 K15397 - gmx:100810048 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00427 11 3999112 4000760 Vian5g01260 5 35358239 35359648 PCT