Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00427 ATGCTATTACTGTTCCTGTTGAGCATTGACATTTGGATTACCGTCTACCTTTCACATTCTCTCATCGCTCTCACACCTTATAAAAGAAGAGACCAAGAGTGTTACATATTGGACTACCAACTGTACAAGCCAAGCGATGAAAGAAAGCTTGGAACCGAATGCTGTGGCAGGATCATAGAGAGGAACAAGCATTTGGGTCTGAATGAGTACAAGTTCCTCCTCAAAGCCGTTGTCAACTCCGGCATTGGTGAGGAAACGTATGCCCCAAGCAACGTCATCGAGGGTCGTGAGGCAGCTCCGACACTGAAAGATGGTGTCACGGAAATGGAGGAGTTTTTTCATGACAGCATTGCCAAGCTCCTTGCAAGTTCAGGCATTTCCCCCTCGCAGATCGATGTGCTTGTGGTGAATGTCTCTATGTTCTCCGTTGTTCCTTCCCTGACTTCAAGAATCATCAACCGCTACAAAATGAGGGAAGACGTAAAGGCTTACAACCTCACTGGGATGGGTTGCAGTGCCAGCCTTATTTCACTCGACATCATTAAAAACATTTTCAAGTCACAGAAGAACAAGTTTGCTGTTTTGGTGACTTCCGAGTCTCTCAGTCCAAACTGGTATAACGGCAACGACAGATCAATGATGCTTGCCAACGGTTTGTTCCGGAGTGGTGGGTGTGTCATACTTTTGACAAACAAAAGATCCTTCAAACACAGGGCCATGATGAAGCTGAAGTGTTTGGTGAGGACTCACCATGGGGCTAGAGAAGATGCTTACAGTTGCTGCAATCAGAAGGAAGATGAGGAAGGCAGGCTTGGGTTTTACCTTGGCAAAAACCTTCCCAAGGCAGCTACAAGAGCCTTTGTTGATAACCTAAGGGTGTTGTCACCCAAGGTTTTGCCTACTAGAGAGTTGCTGAGGTTTATGGTTTTGTTCCTCTACAGAAAACTGAGGGAAAGTAGTTCCCTTAAGTCTTCAAGTGGGGGATCTAGTAAGTCTAGTAACAAATCTCCTTTGAACTTCAAGACTGGGATTGAACATTTTTGCCTGCACACAGGAGGAAAAGCTGTGATTGATGGGATTGGAATGAGCTTAGATCTGTGTGAATATGACCTCGAACCAGCAAGAATGACACTGCATAGGTTCGGCAACACTTCCGCTAGTAGCCTGTGGTACGTGCTGGGGTACATGGAGGCCAAAAAAAGGCTCATGAAGGGTGACAGAGTACTGATGATAAGCTTTGGTGCTGGCTTTAAATGCAACAGTTGTTTGTGGGAGGTAATGAAGGATCTGAACGATCGTCCTAATGTGTGGGACGAATGCATTGATGACTACCCACCAGAGTCCTTGGCCAACCCTTTCATGGAGAAATTTGGTTGGATCAATGATGTTCAAGAAGCAAGCAACTTCAAACTCCATGATTTTATCAAGTAA 1431 0.4535 MLLLFLLSIDIWITVYLSHSLIALTPYKRRDQECYILDYQLYKPSDERKLGTECCGRIIERNKHLGLNEYKFLLKAVVNSGIGEETYAPSNVIEGREAAPTLKDGVTEMEEFFHDSIAKLLASSGISPSQIDVLVVNVSMFSVVPSLTSRIINRYKMREDVKAYNLTGMGCSASLISLDIIKNIFKSQKNKFAVLVTSESLSPNWYNGNDRSMMLANGLFRSGGCVILLTNKRSFKHRAMMKLKCLVRTHHGAREDAYSCCNQKEDEEGRLGFYLGKNLPKAATRAFVDNLRVLSPKVLPTRELLRFMVLFLYRKLRESSSLKSSSGGSSKSSNKSPLNFKTGIEHFCLHTGGKAVIDGIGMSLDLCEYDLEPARMTLHRFGNTSASSLWYVLGYMEAKKRLMKGDRVLMISFGAGFKCNSCLWEVMKDLNDRPNVWDECIDDYPPESLANPFMEKFGWINDVQEASNFKLHDFIK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00427 476 PIRSF Very_long_ch_3-ktacl-CoA_syn 2 459 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vian11g00427 476 SUPERFAMILY Thiolase-like 64 427 IPR016039 GO:0016746
Vian11g00427 476 Gene3D - 61 426 IPR016039 GO:0016746
Vian11g00427 476 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 344 425 IPR013747 -
Vian11g00427 476 CDD CHS_like 24 424 - -
Vian11g00427 476 PANTHER 3-KETOACYL-COA SYNTHASE 11 446 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vian11g00427 476 Pfam FAE1/Type III polyketide synthase-like protein 28 316 IPR013601 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00427 Vian-Chr11 3999112 4000760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00427 29 473 Acyl Lipid Metabolism Gene Families AT2G28630 68.444 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00427 K15397 - gmx:100776947 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00427 11 3999112 4000760 Vian11g00427 11 3999112 4000760 ECH
Vian11g00427 11 3999112 4000760 Vian5g01260 5 35358239 35359648 PCT