Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01250 ATGAAAACTTCCATCACCAGAATCAGTTTTAAACCTTTGTTCTTGTTCTTCGTGTTACTCACATCAACCCATGCAGAAACCATGTCCACCCCAACTTCAAACCTATTCCGAGAATACATAGGAGCGGAGTTCAACAACGTTAAGTTCTCCGATGTTCCAATTAACCCTAGTGTCCAGTTCCACTTCATTCTCTCCTTCGCCATTGACTACGACACCTCATCAACCTCTTCTCCAACAAACGGAAAATTCAATGTCTTCTGGGACACCGACAACCTTAACCCTACCCAAGTCTCAGCCGTGAAGGCGAAAAACTCAAACGTCAAAGTAGCCCTGAGTCTCGGAGGAGACAGCGTCGGAGGAGGCTCCGCTTACTTCAACCCCTCGTCGATCGATTCCTGGGTTTCCAACGCCGTTTCTTCATTGACAAGCATAATCAAAGAGTACAACTTGGACGGAATCGACATCGACTACGAGCACTTCAAAACGGACCCTGAAACGTTCTCGGAGTGTGTGGGGAGGGTGATCAAGACGCTGAAATCGAACGGGGTGATAGAATTTGCCTCCATTGCTCCTTTTGACGATGACCAAGTTCAGAGCCACTACCTGGCCTTGTGGAAGAGTTACGGGAACCTCATAGACTACGTTAACTTTCAGTTTTATGCGTACGACAAGGGCACCAGTGTGGCACAGTTCATCGACTACTTCAACACGCAGAGTTCGAATTACAAAGGTGGAAAGGTGTTGGTGAGTTTCATCAGTGATGGAAGTGGCGGTTTGGCCCCGAATGATGGCTTCTTTACAGCATGTCACACGCTAAAGACTCAGCAAAACCTTCATGGTATCTTTGTCTGGTCTGCTGATGACTCCATGGGAAATGATTTTCGTTATGAGAAGCAATCACAAGCCCTTTTGGCTTTACCGTAG 924 0.4697 MKTSITRISFKPLFLFFVLLTSTHAETMSTPTSNLFREYIGAEFNNVKFSDVPINPSVQFHFILSFAIDYDTSSTSSPTNGKFNVFWDTDNLNPTQVSAVKAKNSNVKVALSLGGDSVGGGSAYFNPSSIDSWVSNAVSSLTSIIKEYNLDGIDIDYEHFKTDPETFSECVGRVIKTLKSNGVIEFASIAPFDDDQVQSHYLALWKSYGNLIDYVNFQFYAYDKGTSVAQFIDYFNTQSSNYKGGKVLVSFISDGSGGLAPNDGFFTACHTLKTQQNLHGIFVWSADDSMGNDFRYEKQSQALLALP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01250 307 SUPERFAMILY (Trans)glycosidases 33 299 IPR017853 -
Vian5g01250 307 Pfam Glycosyl hydrolases family 18 61 224 IPR001223 GO:0005975
Vian5g01250 307 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 150 158 IPR001579 GO:0004553|GO:0005975
Vian5g01250 307 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 34 301 IPR001223 GO:0005975
Vian5g01250 307 CDD GH18_narbonin 35 289 - -
Vian5g01250 307 PRINTS 2-S globulin family signature 97 115 IPR000677 -
Vian5g01250 307 PRINTS 2-S globulin family signature 33 46 IPR000677 -
Vian5g01250 307 PRINTS 2-S globulin family signature 267 286 IPR000677 -
Vian5g01250 307 PRINTS 2-S globulin family signature 80 95 IPR000677 -
Vian5g01250 307 PANTHER CHITINASE 2-LIKE 15 305 - -
Vian5g01250 307 Gene3D Glycosidases 32 306 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01250 - - vum:124843731 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00434 11 4076250 4077053 Vian5g01250 5 35232807 35233730 PCT