Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian5g01179 | ATGTTAACTCGTAAAAGATTCCTCCTTTCGCTCTCACTCGCCACTCTTCTTCTCTTCTCCTCCCTCTCCCTCTCTCTCTCCGACAAGCCCTCTCCAAACGACAACAAAAACAAGGAAAACGACAACGATGACGATGAAGATCTCAGTTTCCTCGAGGAACCTGACGACGTCGCCGCTACTTCGCACCGCGCCCAGTTCCCAGATCCCGACCACTTCAACGGCGATGAAGACGACGACGACGACTTTGGCGACTTCTCCGGCTTCGACTCCTCCACCGAGGACGCGTTCAAGGAGCCCGCGGTCGACGACAAGGACGTCGTCGTTTTGAAGGAGCGCAACTTCACCACCGTCATCGAGAACAATCGCTTCGTCATGGTCGAGTTCTACGCCCCCTGGTGCGGCCACTGCCAGGCCCTTGCGCCTGAGTACGCCGCTGCCGCTACCGAGCTCAAGCCCGACGGCGTTGTTTTGGCAAAGGTCGACGCCACCATCGAGAACGAATTGGCGCACGAGTACGATGTCCAGGGCTTCCCCACTGTCTTCTTCTTCGTCGATGGCGTTCACAAGCCTTACACTGGCCAAAGAACCAAAGATGGTATAGTGACATGGATCAAGAAGAAGATAGGACCTGGTGTGTCTAACATAACCACCTTGGATGAAGCTGAACGCATATTGACCGCCGAAAGTAAAGTTGTTTTGGGCTTCCTGAACTCTTTAGTTGGTGCTGAGAGTGATGAGCTAGCCGCAGCATCAAAGCTCGAGGATGGTGTCAATTTTTATCAAACTGTGGTACCTGAGGTGGCAAAGCTTTTCCATATTGATGCTAGTGTTAAACGCCCTGCTTTGATCTTGCTCAAAAAAGAGGAGGAGAAACTCAACCATTTTGATGGCAAATTTGTGAAATCTGAAATAGCTGAATTTGTATCTTCCAACAAGCTTCCTTTGGTTACAACTTTTACAAGAGAAAGTGCCTCTGCAATATTTGAAAGTGAAATTAAGAAACAGTTGTTGCTGTTTGCGACTTCAAATGATACAGAGAAGTTTCTTCCAGTATTTAAAGAATCTGCAAAACTTTTTAAGGGCAAGCTGATATTTGTTCTTGTGGAAATGGATAATGAAGATGTTGGAAAGCCGGTTGCAGATTATTTTGGTATCACTGGGAATGACCCCAAAGTACTTGCATACACAGGCAATGATGATGGAAGAAAATTTTTGCTTGATGGGGATGTGTCTGTTGACAAAATAACGGCGTTTGGAAATGATTTTCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGACCCAGTTCCTGAAAGCAATGATGGTGATGTGAAAATAGTTGTTGGAAATAACTTTGATGAAATTGTCTTGGACGAGTCAAAGGATGTTCTGCTTGAGATTTATGCCCCCTGGTGTGGTCACTGCCAAGCTCTGGAACCAACATACAACAAGCTTGCTAAACATCTTCACAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGGCTGATGGATTTCCCACTCTTCTCTTCTACCCAGCAGCAAACAAGAGTTCTGATCCTATTCCTGTTGATGTGGATCGTACGGTGGTATCTTTTTACAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAGCCACAACTTCTGAACCCAGTAGCGATAGTTCTGATGTGAAGGAAAGCCAGAGCAGCAGCACTGATGTGAAGGATGAATTGTAA | 1761 | 0.4656 | MLTRKRFLLSLSLATLLLFSSLSLSLSDKPSPNDNKNKENDNDDDEDLSFLEEPDDVAATSHRAQFPDPDHFNGDEDDDDDFGDFSGFDSSTEDAFKEPAVDDKDVVVLKERNFTTVIENNRFVMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATIENELAHEYDVQGFPTVFFFVDGVHKPYTGQRTKDGIVTWIKKKIGPGVSNITTLDEAERILTAESKVVLGFLNSLVGAESDELAAASKLEDGVNFYQTVVPEVAKLFHIDASVKRPALILLKKEEEKLNHFDGKFVKSEIAEFVSSNKLPLVTTFTRESASAIFESEIKKQLLLFATSNDTEKFLPVFKESAKLFKGKLIFVLVEMDNEDVGKPVADYFGITGNDPKVLAYTGNDDGRKFLLDGDVSVDKITAFGNDFLEDKLKPFLKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLHSIESIVIAKMDGTTNEHPRAKADGFPTLLFYPAANKSSDPIPVDVDRTVVSFYKFLRKHASIPFQLQKPATTSEPSSDSSDVKESQSSSTDVKDEL | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian5g01179 | 586 | SUPERFAMILY | Thioredoxin-like | 100 | 209 | IPR036249 | - | |
| Vian5g01179 | 586 | Pfam | Thioredoxin-like domain | 247 | 420 | - | - | |
| Vian5g01179 | 586 | ProSitePatterns | Thioredoxin family active site. | 464 | 482 | IPR017937 | - | |
| Vian5g01179 | 586 | Gene3D | Glutaredoxin | 313 | 437 | - | - | |
| Vian5g01179 | 586 | SUPERFAMILY | Thioredoxin-like | 440 | 551 | IPR036249 | - | |
| Vian5g01179 | 586 | Gene3D | Glutaredoxin | 93 | 208 | - | - | |
| Vian5g01179 | 586 | ProSiteProfiles | Thioredoxin domain profile. | 430 | 551 | IPR013766 | - | |
| Vian5g01179 | 586 | CDD | PDI_b'_family | 323 | 423 | - | - | |
| Vian5g01179 | 586 | ProSiteProfiles | Thioredoxin domain profile. | 87 | 230 | IPR013766 | - | |
| Vian5g01179 | 586 | FunFam | Protein disulfide-isomerase | 439 | 552 | - | - | |
| Vian5g01179 | 586 | FunFam | Protein disulfide-isomerase | 95 | 207 | - | - | |
| Vian5g01179 | 586 | Gene3D | Glutaredoxin | 209 | 312 | - | - | |
| Vian5g01179 | 586 | SUPERFAMILY | Thioredoxin-like | 311 | 441 | IPR036249 | - | |
| Vian5g01179 | 586 | NCBIfam | protein disulfide-isomerase | 104 | 586 | IPR005792 | GO:0003756 | |
| Vian5g01179 | 586 | FunFam | protein disulfide-isomerase A2 | 208 | 312 | - | - | |
| Vian5g01179 | 586 | PRINTS | Thioredoxin family signature | 173 | 184 | - | - | |
| Vian5g01179 | 586 | PRINTS | Thioredoxin family signature | 124 | 132 | - | - | |
| Vian5g01179 | 586 | PRINTS | Thioredoxin family signature | 132 | 141 | - | - | |
| Vian5g01179 | 586 | MobiDBLite | consensus disorder prediction | 26 | 79 | - | - | |
| Vian5g01179 | 586 | Gene3D | Glutaredoxin | 438 | 552 | - | - | |
| Vian5g01179 | 586 | CDD | PDI_b_family | 212 | 311 | - | - | |
| Vian5g01179 | 586 | Pfam | Thioredoxin | 106 | 206 | IPR013766 | - | |
| Vian5g01179 | 586 | Pfam | Thioredoxin | 444 | 527 | IPR013766 | - | |
| Vian5g01179 | 586 | MobiDBLite | consensus disorder prediction | 556 | 576 | - | - | |
| Vian5g01179 | 586 | MobiDBLite | consensus disorder prediction | 556 | 586 | - | - | |
| Vian5g01179 | 586 | PANTHER | PROTEIN DISULFIDE ISOMERASE | 6 | 583 | - | - | |
| Vian5g01179 | 586 | NCBIfam | protein disulfide-isomerase domain | 110 | 207 | IPR005788 | GO:0003756 | |
| Vian5g01179 | 586 | CDD | PDI_a_family | 107 | 204 | - | - | |
| Vian5g01179 | 586 | FunFam | Protein disulfide-isomerase | 313 | 438 | - | - | |
| Vian5g01179 | 586 | CDD | PDI_a_PDI_a'_C | 444 | 546 | - | - | |
| Vian5g01179 | 586 | ProSitePatterns | Thioredoxin family active site. | 125 | 143 | IPR017937 | - | |
| Vian5g01179 | 586 | SUPERFAMILY | Thioredoxin-like | 215 | 323 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian5g01179 | Vian-Chr5 | 34311926 | 34315365 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian5g01179 | K09580 | - | gmx:100790223 | 934.865 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vian11g00475 | 11 | 4583632 | 4587730 | Vian5g01179 | 5 | 34311926 | 34315365 | PCT |