Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00475 ATGCGAATCCTTCTCCTTCTCTCCCTCGCCACGCTCCTCCTCTTCTCCTCCTTCTCTTCCACCCTCTGCGCCGCCCCGCCCGCGGCCGACGACGACAATGAAGACCTCAGTTTCCTCGAAGAGGAGACCTCCACACCGGACCACCACCAACACCACTTCGATGACGCCAGTGACGACTTCGACGACTTCGAGGACGACTCCGAGGCCTACAAGCAGCCTCAGGTTGACGAGAAAGATGTCATCGTTTTGAAGGACAAGAATTTCAGCGACGTCATCAAGAACAACCGCTTCGTCATGGTCGAATTCTACGCGCCGTGGTGCGGCCACTGTCAGGCACTCGCACCGGAGTACTCCGCCGCCGCCTCCGAGCTCAAGGGCGAAGATGTCATTTTGGCGAAGGTCGATGCCACGGAGGAGAATGAATTGGGGCAGCAATACGATGTGCAGGGTTTTCCCACTATCTACTTCTTCGCTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAGGATGCTATAGTAACGTGGATTAAGAAGAAAATTGGACCTGGTGTATACAACTTGACTACATTGGAGGATGCTCAACGTATTCTGGCCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTTCTGAGAGTGAGGAGCTTGCTTCCGCTTCAAGACTTGAGGATGATGTCAATTTTTATCAGACTGTGAATTCTGACGTGGCCAAGCTTTTCCATATTGATCCCGATGCTAAGCGCCCAGCTTTGATCCTCGTCAAGAAGGAGGAAGAAAAACTTAGCCACTTTGATGGAAAATTTGAGAAGTCTGCAATAGCGGACTTTGTCTTTTCAAACAAGCTTCCTTTGGTAACAATATTTACAAGAGAAAGTGCCCCAGCAGTTTTCGAAAATTCAATCAAGAAACAGGTGTTGCTGTTTGCGACTTCAAAGGATTCACAGAAGTTCATCCCAGTATTTCAAGAAGTAGCAAAATCTTTCAAGGGAAAGTTGATCTTTGTATCCGTTGAACTGGATAATGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTGTCGGCGGAGATGGTCCAAAAGTACTTGGATACACTGGGAATGATGATGGAAGAAAATTTGTGCTTGACGGAGAGGTGACTGCTGACAGAATTAAGGCATTTGGGGAAGATTTTCTCGATGACAAGCTGAAACCATTTTACAAGTCAGATCCAATCCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTTGAGATTTATGCTCCCTGGTGTGGCCATTGCCAAGCACTGGAGCCAATATATGACAAGCTTGCGAAACATCTTCGTAGTATCGAGTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCACCCCAGGGCTAAGCCCGACGGATTCCCCACCCTTCTTTTCTTCCCAGCAGGAAACAAGAGTTTTGAACCTATTACTGTTGATACAGATCGTACTGTGGTGGCCTTCTACAAGTTCCTCAAAAAACATGCATCAATTCCATTCAAGCTCCAGAAACCAACCTCAACTACTCAATCCGAGAGCTCTGGTGACAAAGAGAGACAGAGTAGCAATAGTGATGTGAAGGATGAATTATGA 1677 0.4627 MRILLLLSLATLLLFSSFSSTLCAAPPAADDDNEDLSFLEEETSTPDHHQHHFDDASDDFDDFEDDSEAYKQPQVDEKDVIVLKDKNFSDVIKNNRFVMVEFYAPWCGHCQALAPEYSAAASELKGEDVILAKVDATEENELGQQYDVQGFPTIYFFADGIHKPYNGQRTKDAIVTWIKKKIGPGVYNLTTLEDAQRILANETKVVLGFLNSLVGSESEELASASRLEDDVNFYQTVNSDVAKLFHIDPDAKRPALILVKKEEEKLSHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPAVFENSIKKQVLLFATSKDSQKFIPVFQEVAKSFKGKLIFVSVELDNEDVGKPVSEYFGVGGDGPKVLGYTGNDDGRKFVLDGEVTADRIKAFGEDFLDDKLKPFYKSDPIPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYDKLAKHLRSIESLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFEPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTTQSESSGDKERQSSNSDVKDEL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00475 558 PRINTS Thioredoxin family signature 98 106 - -
Vian11g00475 558 PRINTS Thioredoxin family signature 106 115 - -
Vian11g00475 558 PRINTS Thioredoxin family signature 147 158 - -
Vian11g00475 558 Pfam Thioredoxin-like domain 222 392 - -
Vian11g00475 558 MobiDBLite consensus disorder prediction 531 545 - -
Vian11g00475 558 SUPERFAMILY Thioredoxin-like 413 525 IPR036249 -
Vian11g00475 558 FunFam Protein disulfide-isomerase 413 526 - -
Vian11g00475 558 Gene3D Glutaredoxin 183 282 - -
Vian11g00475 558 PANTHER PROTEIN DISULFIDE ISOMERASE 5 557 - -
Vian11g00475 558 FunFam protein disulfide-isomerase A2 182 286 - -
Vian11g00475 558 ProSitePatterns Thioredoxin family active site. 438 456 IPR017937 -
Vian11g00475 558 Pfam Thioredoxin 80 180 IPR013766 -
Vian11g00475 558 Pfam Thioredoxin 418 503 IPR013766 -
Vian11g00475 558 FunFam Protein disulfide-isomerase 287 412 - -
Vian11g00475 558 CDD PDI_b_family 186 285 - -
Vian11g00475 558 FunFam Protein disulfide-isomerase 69 181 - -
Vian11g00475 558 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Vian11g00475 558 SUPERFAMILY Thioredoxin-like 73 183 IPR036249 -
Vian11g00475 558 SUPERFAMILY Thioredoxin-like 187 297 IPR036249 -
Vian11g00475 558 ProSiteProfiles Thioredoxin domain profile. 61 183 IPR013766 -
Vian11g00475 558 ProSiteProfiles Thioredoxin domain profile. 395 525 IPR013766 -
Vian11g00475 558 CDD PDI_a_family 81 178 - -
Vian11g00475 558 CDD PDI_a_PDI_a'_C 418 520 - -
Vian11g00475 558 Gene3D Glutaredoxin 283 412 - -
Vian11g00475 558 SUPERFAMILY Thioredoxin-like 285 415 IPR036249 -
Vian11g00475 558 MobiDBLite consensus disorder prediction 531 558 - -
Vian11g00475 558 Gene3D Glutaredoxin 68 182 - -
Vian11g00475 558 CDD PDI_b'_family 303 397 - -
Vian11g00475 558 NCBIfam protein disulfide-isomerase 78 558 IPR005792 GO:0003756
Vian11g00475 558 NCBIfam protein disulfide-isomerase domain 83 181 IPR005788 GO:0003756
Vian11g00475 558 Gene3D Glutaredoxin 413 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00475 Vian-Chr11 4583632 4587730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00475 K09580 - gmx:100170706 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00475 11 4583632 4587730 Vian11g00475 11 4583632 4587730 ECH
Vian11g00475 11 4583632 4587730 Vian5g01179 5 34311926 34315365 PCT