LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian5g01171	ATGTCTTCGCCAACAGACACACACTCTCTCTCTAAAATCATAACTATGAACGACAACGAAACAGAGTCCGATGGAGAGATTAGGGCTTCCGTCGAACCCGCTTCGGAGGAAGCTCCATCCAGCCCCGGTAGCAGCGGGTACGTCGGCGAAGGAGGCAGCACCAGCGCAACCACCGGTTCGCAATTCGAAATTGAGCACGAAGAAATAGAAGAGGACACGACGATTCATATGGACAGAATCTCGATTTCCGATTCCCACGCCTCGTGGATTCCCGGCAAACGGCACTTCGATGAGGATGATGGCTCTATATCATGGAGGAAGAGGAAGAAACATTTTTTCGTTCTCAGTCATTCCGGCAAACCTATATATTCCAGGTATGGAGATGAACACAGACTTGCAGGGTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTTGAGAACGGGGGCGACTCTGTCAAATTGGTGAGGGCTGGAAGGCATCAGGTGATTTTTCTAGTGAAAGGACCAATTTACTTAGTCTGCATCAGCTCCACAGAAGAACCTTACGCTTCATTAAGGGGGCAGTTAGAGCTAATTTATGGCCAGATGCTTGTTATACTAACAAAATCAATAAATAGATGTTTTGAGAAGAACCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGAAATTGTCTTCTCTTCTCTAATACACTCTTTCAGCTGGAACCCAGCTACATTTCTTCATGCCTATACTTGTCTCCCTCTTGCATATGCAACAAGGCAAGCTGCAGGAGCTATTTTGCAAGATGTTGCTGATTCGGGTGTTCTGTTTGCAATACTGATGTGCAGGCACAAGGTAATCAGTCTCGTTGGTGCTCAGAAAGCTTCCCTTCATCCAGATGATATACTGCTTTTGGCCAACTTTGTCATGGCATCTGAATCCTTCAGGACATCAGAATCATTTTCTCCAATTTGCTTGCCAAGATATAACCCTTCAGCATTTTTGTATTCATATATCCATTACTTCGATGCTGACACATACTTGGTGTTACTATCCACTAATTCTGATGCATTTTATCATCTTAAAGATTGCAGGATTCGTGTTGAAAATGTTCTTTTGAAGTCATGTGTCCTTAGTGAAGTTCAGAGATCCTTGTTAAACGGGGGAATGCATGTTGAAGATCTGCCACCTATATCTCATTCTGGATCATCTCATTTGGGCCAGCACATGCTTCCATCAGATTCTCCTGACAGATTTAGGGAAGCTAATTCTGGCATTGGGGGTCCTGCTGGGTTGTGGCATTTCATATACCGCAGTATATATCTTGACCAGTATGTCTCCTCGGAGTTCCCACCATCAATCAATACGCCTCAGCTGCAAAAAAGACTGTATAGAGCTTACGAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACTCAATTCAGAAGAGATGAAAACTACGTTCTTCTCTGTTGGGTGACACAGGATTTTGAGCTCTATGCTGCCTTTGATCCCCTTGCAGACAAGGCCTTGGCAATCAAGACGTGCAACCATGTTTGTCAGTGGATAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGCTAGCCCCTTTTCATGGTGA	1626	0.4391	MSSPTDTHSLSKIITMNDNETESDGEIRASVEPASEEAPSSPGSSGYVGEGGSTSATTGSQFEIEHEEIEEDTTIHMDRISISDSHASWIPGKRHFDEDDGSISWRKRKKHFFVLSHSGKPIYSRYGDEHRLAGFSATLQAIISFVENGGDSVKLVRAGRHQVIFLVKGPIYLVCISSTEEPYASLRGQLELIYGQMLVILTKSINRCFEKNPKFDMTPLLGGTEIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDILLLANFVMASESFRTSESFSPICLPRYNPSAFLYSYIHYFDADTYLVLLSTNSDAFYHLKDCRIRVENVLLKSCVLSEVQRSLLNGGMHVEDLPPISHSGSSHLGQHMLPSDSPDRFREANSGIGGPAGLWHFIYRSIYLDQYVSSEFPPSINTPQLQKRLYRAYEKLFASMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNHVCQWIKDVENEIFLLGASPFSW	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian5g01171	541	MobiDBLite	consensus disorder prediction	37	62	-	-
	Vian5g01171	541	Pfam	First Longin domain of FUZ, MON1 and HPS1	110	231	IPR043972	GO:0016192
	Vian5g01171	541	MobiDBLite	consensus disorder prediction	1	18	-	-
	Vian5g01171	541	Pfam	Third Longin domain of FUZ, MON1 and HPS1	427	528	IPR043970	GO:0016192
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	110	127	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	162	176	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	266	279	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	213	225	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	490	504	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	290	306	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	506	519	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	519	539	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	128	148	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	242	263	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	315	338	IPR004353	GO:0006623
	Vian5g01171	541	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	343	369	IPR004353	GO:0006623
	Vian5g01171	541	MobiDBLite	consensus disorder prediction	1	62	-	-
	Vian5g01171	541	Pfam	Second Longin domain of FUZ, MON1 and HPS1	271	363	IPR043971	GO:0016192
	Vian5g01171	541	PANTHER	SAND PROTEIN-RELATED	17	539	IPR004353	GO:0006623

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian5g01171	Vian-Chr5	34206120	34211794	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian5g01171	K20195		-	gmx:100814534	850.892

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian11g00479	11	4633945	4639457	Vian5g01171	5	34206120	34211794	PCT