Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01125 ATGTCATCATCACTATCCTCTTTCCTCCCAATGCTTCCTGTTCTCTTCCTTCTTGTACTCTCATGTATGATTTATTCTGGTTCTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTATTAGCTTCAATCAAGGCTTTAAAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGGCTCATTGACAATATGGCTAGACACTAGCACAGGGAGTGGATTCAAGTCACTTCACTCTTACAAGTCTGGATACTTTGGTGCTGCAATTAAGCTTCAACCTGGTTACACGGCAGGAGTCATTACATCTCTCTACCTTTCAAACAACCAAGACCACCCCGGAAACCACGATGAAATTGACATAGAGTTCCTTGGTACCACGCCAGACAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAAATGAGGTTTCATCTCTGGTTTGACCCAACACAGGATTTTCACAACTATGCAGTTCTATGGAAACCTTCTGAGTTAATATTTTTTGTGGATGATGTTCCAATAAGAAGGTATCCAAGGAAAAGTGAGGCCACATACCCTACAAGGCCAATGTATGTGTATGGGTCAATATGGGATGCATCTTCTTGGGCAACAGAGGGTGGAAAATACAAAGCTGATTACAGATACCAACCCTTCGTTGGTAGGTACAAAAACTTCAGACTTCAAGGTTGCACCAGTGAAAGCTCTGCCTCATGCCACCCACCTTCTACATCTTCTGGCTTCGGAAGTCTGAGCCCTCAGCAGTTCAGGGCCATGCAATGGGTCCAAACCAACTACATGGTGTACAACTATTGCCATGATCCTAGGAGAGACCACAATCTGATCCCAGAATGCTGA 906 0.4426 MSSSLSSFLPMLPVLFLLVLSCMIYSGSAQGPPSPGYYPSSKISPISFNQGFKNLWGPQHQRIDQGSLTIWLDTSTGSGFKSLHSYKSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAVLWKPSELIFFVDDVPIRRYPRKSEATYPTRPMYVYGSIWDASSWATEGGKYKADYRYQPFVGRYKNFRLQGCTSESSASCHPPSTSSGFGSLSPQQFRAMQWVQTNYMVYNYCHDPRRDHNLIPEC 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01125 301 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 266 301 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vian5g01125 301 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 301 IPR044791 GO:0004553
Vian5g01125 301 Pfam Glycosyl hydrolases family 16 49 231 IPR000757 GO:0004553|GO:0005975
Vian5g01125 301 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 301 IPR013320 -
Vian5g01125 301 FunFam Xyloglucan endotransglucosylase/hydrolase 35 301 - -
Vian5g01125 301 Gene3D - 28 301 - -
Vian5g01125 301 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 239 IPR000757 GO:0004553|GO:0005975
Vian5g01125 301 PIRSF EndGlu_transf 9 301 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01125 Vian-Chr5 33270470 33271914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01125 12 301 Glycoside Hydrolase AT3G44990 67.010 3.22e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01125 K08235 - gmx:100781528 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00517 11 5140960 5142512 Vian5g01125 5 33270470 33271914 PCT