Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00517 ATGTCCTTGCTACCTTCCTCTTTCTTCCACATGGTTTCTCTCTTCTCTTTTCTTTTATTCTCAATCGTGATTCGTTGTAGTACTGCTCAGGGTCCACCTTCCCCTGGCTACTACCCTAGTTCCAAAATTAGTCCTGTTACCTTTGGTGAGGGATTTAAAAACCTTTGGGGACCTCAGCATCAGAAACTAGACCAAGACTCATTAACAATCTGGCTTGACACTTACACAGGGAGTGGATTCAAGTCACTTCACTCTTACCGATCTGGATACTTTGGTGCTGCGGTTAAGCTTCAACCTGGTTATACAGCAGGAGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCGGGAAACCATGATGAAATAGACATTGAATTCCTTGGTACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTGTACATCAGAGGAAGTGGAGATGGGAACATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACGGAAGATTTTCACAACTACGCTATTCTATGGGAACCCAGTGAGATCATCTTTTTGGTGGATGATGTCCCAATAAGAAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCACAAGAGAAATGCATGTGTACGGATCCATATGGGATGCTTCTTCATGGGCTACAGAGGGTGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTCAATACAAAAATTTCAAACTTGAAGGTTGTACCACCGAAGCCTCCACCTCTTGCCAGCCACCTTCAGCCTCACCTTTAGGCTATGGAAGCCTGAGCTCTCAGCAACTTGCTGCAATGCAGTGGGTCCAAAACAACCACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCACACCCTTACTCCAGAATGTTAA 909 0.4444 MSLLPSSFFHMVSLFSFLLFSIVIRCSTAQGPPSPGYYPSSKISPVTFGEGFKNLWGPQHQKLDQDSLTIWLDTYTGSGFKSLHSYRSGYFGAAVKLQPGYTAGVITSLYLSNNQDYPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPTREMHVYGSIWDASSWATEGGKYKADYKYQPFIGQYKNFKLEGCTTEASTSCQPPSASPLGYGSLSSQQLAAMQWVQNNHLVYDYCHDPGRDHTLTPEC 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00517 302 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 265 302 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vian11g00517 302 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 47 302 IPR044791 GO:0004553
Vian11g00517 302 FunFam Xyloglucan endotransglucosylase/hydrolase 35 302 - -
Vian11g00517 302 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 27 239 IPR000757 GO:0004553|GO:0005975
Vian11g00517 302 Gene3D - 28 302 - -
Vian11g00517 302 Pfam Glycosyl hydrolases family 16 50 231 IPR000757 GO:0004553|GO:0005975
Vian11g00517 302 PIRSF EndGlu_transf 8 302 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vian11g00517 302 SUPERFAMILY Concanavalin A-like lectins/glucanases 47 302 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00517 Vian-Chr11 5140960 5142512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00517 15 302 Glycoside Hydrolase AT3G44990 65.292 1.23e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00517 K08235 - gmx:100796768 577.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00517 11 5140960 5142512 Vian11g00517 11 5140960 5142512 ECH
Vian11g00517 11 5140960 5142512 Vian5g01125 5 33270470 33271914 PCT