Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01053 ATGAGAAAGCTATACAACTCTTCAATGGAGTTTGAAAGTGTTCATTACTTTCTAGAGGGGAAAACCATTTTAGTTACGGGTGCAACGGGATTCCTAGCAAAACTTTTGATGGAGAAGATATTAAGGGTTCAACCAAACATAAAAAAGTTATACCTTCTTCTAAGAGCAGGAAATTCAGAAGAAGCTGCACAACGGCTGCACCATGAGGTTCTGTCGAAGGATTTGTTCAGGGTGCTACGAGGACAGTGGGGTGCAGATTTTGTCTCCTTCATATCTGAGAAGGTGTTGGCTGTTGGTGGCGATGTTTCCGTTGAGAACTTGGGAGTCAAAGACACAGAGCTCAGGGAAAAGTTGTGGGAAGAGACAGACACCATAATAAATTCTGCTGCTACTACCAAGTTTTATGAGAGATTGGATGTTGCGATGGGGATTAATACGATGGGTGCTCTTCATGTTCTGAACTTTGCCAAGAACTGTAGTAAATTACAAATGCTTCTTCATGTATCTACAGCTTACGTATGCGGTGAGGGCAAAGGACTTGTGGCAGAGAAACCTTTTCATATGGGTGAGACCCTAAATGGGTCCTCAAGATTGGACATCAACTTAGAAAAACTGTTAGCTGAAGAGAAATTGAAGGAACTTGAGGCAGAAAATGCCAGTGAAAAAACAATCTCATCGGTTATGAAAAACCTTGGAACTATAAGGTCAAACTTACACGGATGGCCAAATGTGTATGCATTTACGAAAGCAATGGGGGAACAGATTTTGATGAACATGAAAGGTGATATACCATTGATCATTGCACGCCCCACCGTAATACTCAGCACTCACTCTGAACCATTTCCCGGTTGGATTGAAGGTGTCAGAACTATGGACCTCTTTGTTGCGATGTACGGTAAAGGAAAATTAAGAAGAAGCATACCAGCAGACATGGTGATAAACTCCATGATAGTAGCACTTGAGGCTTGTTCAAAGAGTTGTTCAAAGGCATTGATTTATCATATTGGTTCTTCACTGAGAAATCCATTCAGAATTTCTGATCTTGAGGACTTGGCCCATCAATACTTTACAAAACATCCTTTGACAGACATGTATGGAAAACCAGTGGCGAGTTCCAAGAAAGTTACGTGGATGTCTAGTGTGAGTTCATTTCACAGATACGTCAACATTCGATACATGCTAGCTCTCAAGGGAGTAAAGGTGATGAACAAAGTGTGCTGCTACGGTCACGAGGCTTTTTACAATGAAAGTAAAGAGAAAGTTAAAAAGATGGTGGGAATAATGAGACTTTATAAACCTTATCTCCTCTTTGAGGGAATCTTCGATGACAAGAACGCAGAAAATTTAAGGATGAGAAAAATGAAGGGAAAAGATGACGATGATGTTGGAAGATTTAACTTTGATCCCACAACTATTGATTGGACTCATTATATGTTAAACGCTCACATTCCTGGACTTGTGAAGTATGGTGTCAAGTAA 1479 0.4043 MRKLYNSSMEFESVHYFLEGKTILVTGATGFLAKLLMEKILRVQPNIKKLYLLLRAGNSEEAAQRLHHEVLSKDLFRVLRGQWGADFVSFISEKVLAVGGDVSVENLGVKDTELREKLWEETDTIINSAATTKFYERLDVAMGINTMGALHVLNFAKNCSKLQMLLHVSTAYVCGEGKGLVAEKPFHMGETLNGSSRLDINLEKLLAEEKLKELEAENASEKTISSVMKNLGTIRSNLHGWPNVYAFTKAMGEQILMNMKGDIPLIIARPTVILSTHSEPFPGWIEGVRTMDLFVAMYGKGKLRRSIPADMVINSMIVALEACSKSCSKALIYHIGSSLRNPFRISDLEDLAHQYFTKHPLTDMYGKPVASSKKVTWMSSVSSFHRYVNIRYMLALKGVKVMNKVCCYGHEAFYNESKEKVKKMVGIMRLYKPYLLFEGIFDDKNAENLRMRKMKGKDDDDVGRFNFDPTTIDWTHYMLNAHIPGLVKYGVK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01053 492 Coils Coil 197 224 - -
Vian5g01053 492 PANTHER MALE STERILITY PROTEIN 2-RELATED 14 490 IPR026055 GO:0080019
Vian5g01053 492 Pfam Male sterility protein 25 312 IPR013120 -
Vian5g01053 492 Gene3D - 13 390 - -
Vian5g01053 492 Pfam Male sterility protein 392 492 IPR033640 -
Vian5g01053 492 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 324 IPR036291 -
Vian5g01053 492 CDD FAR_C 407 489 IPR033640 -
Vian5g01053 492 CDD FAR-N_SDR_e 21 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01053 Vian-Chr5 32226684 32229047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01053 9 397 Acyl Lipid Metabolism Gene Families AT5G22500 51.750 1.11e-141 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01053 K13356 - gmx:100793736 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00572 11 5757755 5761418 Vian5g01053 5 32226684 32229047 PCT