Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00572 ATGGAATTGGGAAGCATAATTCACTTCCTTCAGGATAAGACCATCTTAGTCACTGGTGCCACTGGTTTTCTTGCAAAAATTTTTGTAGAAAAAATATTGAGGGTTCAACCAAATGTGAAGAAACTTTATCTGCTTTTGAGAGTTAAAGATACTGAATCCGCTACTCAACGCTTAGATAACGAGATCATAGGGAAGGACTTGTTTAGATTGCTGAAGGAAAAACTGGGAACAAGATTCAGTTCCTTTGTCTCAGAAAAGCTCACTGTGGTACCTGGAGACATTTCTCATGAGGACTTGAATTTGAAGAACTCCATTCTGAGGGAAGAAATTTGTAACCAAACAGATGTTATAGTTAATCTAGCTGCAACAACTAACTTCGATGAAAGATACGATGTTGCACTGGGTATAAATACATTAGGAGTTAAACATGTGATGAGCTTTGCCAAGAAATGTGTAAAGCTGAAGGTGTTTGTCCACGTATCAACAGCTTATGTATGTGGAGAAAGAGGAGGACTGATACTAGAGGATCCACATCACTTTGGTGTGTCACTAAATGGAGTGAGAGGACTAGACATTGAAATGGAAAAGAAGAAGGTAGAGGAGAAACTGAATGAGCTGAAAGAGGAGGGAGCCACAGAACATGATATTGAATTGGCCATGAAGAACTTGGGAAGTAAAAGAGCAACGATGTATGGATGGCCAAACACGTATGTGTTTACAAAGGCAATGGGAGAAATGATTGTAGGAACTACAAAGGGAAACATGAACGTAGTAATTGTACGTCCCACAATCATTACTAGTACTTACAGAGAACCTTTCCCTGGTTGGATCGAAGGTTTAAGAACCATAGACAGCTTGATTGTTGCTTATGGTAAAGGAAAGTTAACTTGCTTCCTTGCGGATCTTAAGGCTGTTTTTGATGTGATACCAGCAGACATGGTGGTGAATGCAATCCTAGTGAGCATGGTGGGTCGTGCAAATCAACCTAGTGACATCATATACCATGTGGGTTCCTCTGTTGCAAATCCAGTTAGGTACCTTAATCTTCGAGAGTACGCCGTAAGATATTTCACGGAAAAACCTTGGATAAACAAGGAAGGAAAGCCCGTAAAGGTTGGCAAAGTTACCATATTGAGCAACATGGATAGCTTCTACAGATATATGTACATTCGTTATCAGCTTCCCCTAAAGGGACTGGAGCTGGTGAATGCAGCTTCGTGCCATTATTTTCAGGAAATTTGTGTGGACTTCAATAGGAAGATCCGCACAATCATGCGATTGGTTGAGCTTTACAAGCCTTACTTGTTCTTCAATGGGATATTTGATGATTTGAACAGAGAAAAGTTGTGGTCAATGGGAAGAGAAGGTGGAGTAGAGACTGAATTGTTTTACTTTGACCCCAAAATGATTGATTGGGAAGACTATTTCATGAATATCCATTTTCCTGGAATCATAAAGTATGCTTTCAAGTGA 1473 0.3985 MELGSIIHFLQDKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRVKDTESATQRLDNEIIGKDLFRLLKEKLGTRFSSFVSEKLTVVPGDISHEDLNLKNSILREEICNQTDVIVNLAATTNFDERYDVALGINTLGVKHVMSFAKKCVKLKVFVHVSTAYVCGERGGLILEDPHHFGVSLNGVRGLDIEMEKKKVEEKLNELKEEGATEHDIELAMKNLGSKRATMYGWPNTYVFTKAMGEMIVGTTKGNMNVVIVRPTIITSTYREPFPGWIEGLRTIDSLIVAYGKGKLTCFLADLKAVFDVIPADMVVNAILVSMVGRANQPSDIIYHVGSSVANPVRYLNLREYAVRYFTEKPWINKEGKPVKVGKVTILSNMDSFYRYMYIRYQLPLKGLELVNAASCHYFQEICVDFNRKIRTIMRLVELYKPYLFFNGIFDDLNREKLWSMGREGGVETELFYFDPKMIDWEDYFMNIHFPGIIKYAFK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00572 490 Gene3D - 8 373 - -
Vian11g00572 490 Pfam Male sterility protein 17 318 IPR013120 -
Vian11g00572 490 Pfam Male sterility protein 392 490 IPR033640 -
Vian11g00572 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 489 IPR026055 GO:0080019
Vian11g00572 490 CDD FAR-N_SDR_e 13 361 - -
Vian11g00572 490 CDD FAR_C 419 489 IPR033640 -
Vian11g00572 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 337 IPR036291 -
Vian11g00572 490 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00572 Vian-Chr11 5757755 5761418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00572 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 63.421 1.58e-179 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00572 K13356 - gmx:100789566 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00572 11 5757755 5761418 Vian11g00572 11 5757755 5761418 ECH
Vian11g00572 11 5757755 5761418 Vian5g01053 5 32226684 32229047 PCT