Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01052 ATGCCTCAGTTCTTCCAGGGAAAGACCATTTTAATCACTGGCACAACGGGCTTCTTAGCAAAAGTTTTCTTGGAAAAGATTCTAAGAACACAACCAGAAGTTAAAACACTATATCTTCTCGTACGAGCAGAAAACATTGATTTGGCTGCAAAACGCTTTCAAAATGAGGTGATTCTGACAGATTTATTTAGAGTGTTACGGGACCAATGGGGTGAAGATTTTGATTCTTTCATCTCGAGCAAGATTGTGGTCATACCAGGAGATGTTTCTCTCCATAACTTTGGTCTGAAAGATGAAAAGCTTAAGAATAAGATGTTGGAAGAGACCAACGTTGTTGTGAATTTTGCAGCATCTACTAAATTTGACGAAAGATTTGACATCTTAATGGGTGGAAATACAATGGGTGCCTTACATGTCTTAAACTTCGCAAAGAATTGTCGCCAGATAAAGGCTTTTGTGCATACATCAACTGCATATGTGTGTGGAGAGATTAAGGATAGAAAAACAATTGTGCAAGAGAAACCCTTTGAGATGGGTCAGACCCTGAAAGAGACCTCGAAATTAGACATCACTGCAGAAATGAATTTGTTGAAGAAGAAAATCGATGAACTCCGATCAGAGAATGCTACTGAAAACACAATCAGATATGTAATGAAAGATTACGGAATTGAAAGAGCAAAGTTGTATGGTTGGCCAAACACATACACATTCACAAAAGCAATGGGAGAGATGCAAGTGGTTCATCACAAAGATAATGTTCCACTAATCATTATACGTCCCACCATGGTTACCAGTACCTTTAAGGACCCATTTCCTGGTTGGATTGAAGGCTTAAGAACTCTGGACAGCATAATATGTAGCTTTGGTCAAGGGAAAATAACAAGCTTTCTTGGTCATCCCAAGACAATTTTGGATACAATACCTGCGGACATGGTTGTCAATTGTATGATGACAGCAATTGTTGCTTGTTCAAATGAAGCTCCAAAGAATTTCATCTACCACGTTTCTTCATCGTCAAGAAATCCATTCAGAATTGCCGATGTTCGTGATTTCAGCTATAGTTATTTCACTAAATTCCCAATCAGAAACAAAATTGGAAAGCCAATAACAGTTTCCAAGCCAACTTTGATATCAAGTAGGGTTGCTTTCGACATTCTCATGACAGTCCGATATTGTTTGCCACTAAAGGTGTTAAATTTGGTGAACGAAGCGTTTTGTCAATGCTCTCGAGATGTTTACGAGGATAGCTACAAAAAAATCAAAAGGGTGACACGACTGGTTGAACTGTACAAACCATACCTGTTTTTTAAGGGCGTCTTCGACGATTCAAACACACAAAATTTACGAAGAGCAACAAGTAATAACATGGAGGTTGATGGATTGGACTTTGACCCTAATAGCATCGATTGGGAAGACTACATGATGAACACACACATTCCTGGTCTTGTAAAGTATGCATTGAAATGA 1467 0.3851 MPQFFQGKTILITGTTGFLAKVFLEKILRTQPEVKTLYLLVRAENIDLAAKRFQNEVILTDLFRVLRDQWGEDFDSFISSKIVVIPGDVSLHNFGLKDEKLKNKMLEETNVVVNFAASTKFDERFDILMGGNTMGALHVLNFAKNCRQIKAFVHTSTAYVCGEIKDRKTIVQEKPFEMGQTLKETSKLDITAEMNLLKKKIDELRSENATENTIRYVMKDYGIERAKLYGWPNTYTFTKAMGEMQVVHHKDNVPLIIIRPTMVTSTFKDPFPGWIEGLRTLDSIICSFGQGKITSFLGHPKTILDTIPADMVVNCMMTAIVACSNEAPKNFIYHVSSSSRNPFRIADVRDFSYSYFTKFPIRNKIGKPITVSKPTLISSRVAFDILMTVRYCLPLKVLNLVNEAFCQCSRDVYEDSYKKIKRVTRLVELYKPYLFFKGVFDDSNTQNLRRATSNNMEVDGLDFDPNSIDWEDYMMNTHIPGLVKYALK 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01052 488 Coils Coil 187 214 - -
Vian5g01052 488 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 488 IPR026055 GO:0080019
Vian5g01052 488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 325 IPR036291 -
Vian5g01052 488 CDD FAR-N_SDR_e 8 360 - -
Vian5g01052 488 Gene3D - 2 367 - -
Vian5g01052 488 Pfam Male sterility protein 12 316 IPR013120 -
Vian5g01052 488 CDD FAR_C 417 487 IPR033640 -
Vian5g01052 488 Pfam Male sterility protein 391 488 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01052 Vian-Chr5 32221666 32224433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01052 3 440 Acyl Lipid Metabolism Gene Families AT3G44560 47.955 4.21e-146 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01052 K13356 - cave:132162790 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00573 11 5768303 5773948 Vian5g01052 5 32221666 32224433 PCT