Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00573 ATGGAGGTCGGAAGTGTTCTTCACTTTCTTCAAAACAAAACCATTTTAATCATTGGAGCCACAGGCTTTCTAGCCAAAATTTTTCTGGAGAAGATATTGAGGGTTCAACCCAATGTTAAGAAGATTTTTCTTCTTTTGAGAGCCTCAGATGATAATTCTGCCACTTATCGATTGCACAATGAGATCATAGCGAAGGACTTGTTCATTGTGCTAAAGGAAAAACTGGGTGCAAATTTTAAGTCCTTCATTTCTGAAAAACTGACTCTGGTGCCGGGAGACATTTCCTATGAGGATTTGGGTTTGAAAGATTCAACTCTGAGGGAAGACATCTGCAATCAAACGGATGTTATAGTCAATTTGGCTGCAACTACCAACTTTGATGAAAGGTACGATATAGCTTTGGGTCTAAACACCTTTGGGGTGAAGCATGTCATGAACTTTGCTAAACAGTGTACTAAACTGAAAGTGCTTGTTCATGTATCAACAGCCTACGTATGTGGTGAGAGAGGTGGACTCATACCAGAGGACCCCTACCACTTTGGTGAAACACTAAATGGAGTGTCTGGCCTAGACATCGATGCAGAAAAGACCATTGTGTGTAACAAATTGGATGAACTAAAAGAACAAGGAGCCACAGAACGTGATGTTAAAATAGCCATGAAGAATCTGGGTATCAGCAGGGCAAAGGTGTATGGATGGCCAAACACATACGTGTTTACAAAGGCAGTGGGAGAAATGCTTGTGGAAAAACTCAAAGGAAACCTATCTGTTGTTATTCTGCGACCTACCATTGTCACAAGCACAATGAAAGAACCTTTTCCTGGTTGGGCTGAGGGTGTCAGAACCATTGACAGTTTAGCTGTTACTTATGGGAAAGGAAAGCTAACATGTTTCCTTGGAGATATCAATGGAGTTGTGGATGTGGTCCCAGCAGACATGGTGGTGAATGCTATGCTAGTGGCCATGGTGGCTCATGCAAAGCAGCCAAGTGATATCATATACCACGTGGGTTCCTCTGTTAGAAATCCACTCACATACTTGAATCTCCAAGACTTTGGATTAAAATATTTCTCTGCAAAACCATGGATAAGAAAGGATGGCACACCAGTCAAAGTTGGCAGAGTGACTGTGCTGACCAGCATGGATAGCTTTCAGAGATATATGTTCATTCGTTACCTCCTTCCATTAAAGGGACTGGAGCTGGCCAATGCTGCACTTTGTCAGTATTTTCGGGGAACATATCTTGAGCTGCATAGGAAGATCCAAGTTGTGATGCGGATGGTTGAACTTTACAGACCCTACATGTTCTTTACGGGCGTATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAAAACAAAGTGGGACAGAGACAGATCTGTTTTACTTTGATACAAAAGATATTAATTGGGATGATTACTTTATGAAGACCCATATTCCTGGCATTGTCAAGTACATTTTCAAGTGA 1473 0.4155 MEVGSVLHFLQNKTILIIGATGFLAKIFLEKILRVQPNVKKIFLLLRASDDNSATYRLHNEIIAKDLFIVLKEKLGANFKSFISEKLTLVPGDISYEDLGLKDSTLREDICNQTDVIVNLAATTNFDERYDIALGLNTFGVKHVMNFAKQCTKLKVLVHVSTAYVCGERGGLIPEDPYHFGETLNGVSGLDIDAEKTIVCNKLDELKEQGATERDVKIAMKNLGISRAKVYGWPNTYVFTKAVGEMLVEKLKGNLSVVILRPTIVTSTMKEPFPGWAEGVRTIDSLAVTYGKGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSVRNPLTYLNLQDFGLKYFSAKPWIRKDGTPVKVGRVTVLTSMDSFQRYMFIRYLLPLKGLELANAALCQYFRGTYLELHRKIQVVMRMVELYRPYMFFTGVFDDMNTEKLRMAAKQSGTETDLFYFDTKDINWDDYFMKTHIPGIVKYIFK 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00573 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 6 490 IPR026055 GO:0080019
Vian11g00573 490 Pfam Male sterility protein 18 318 IPR013120 -
Vian11g00573 490 Gene3D - 8 373 - -
Vian11g00573 490 CDD FAR_C 390 489 IPR033640 -
Vian11g00573 490 Pfam Male sterility protein 392 490 IPR033640 -
Vian11g00573 490 CDD FAR-N_SDR_e 13 361 - -
Vian11g00573 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 337 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00573 Vian-Chr11 5768303 5773948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00573 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 59.737 2.80e-176 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00573 K13356 - gmx:100805776 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00573 11 5768303 5773948 Vian11g00573 11 5768303 5773948 ECH
Vian11g00573 11 5768303 5773948 Vian5g01052 5 32221666 32224433 PCT