Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g01032 ATGAGAAGCAGGCTTCATCTACAGACTGGGGTCCTTGGCCATGATGATGATCAGATCAATTTGTTAGTGAAAATCCATGGCCTTGGTTTTGGAATCAACTACGGACAGATAGCCAACAATTTACCTCTTCCATCTCAAGTAGCTGTTCTTATAAAATCTTTGAATGTGAGTAGGATCAAACTGTATGATGCTGATCCAAATGTTTTGGTTGCCTTCTCAGAATCCAATGTGGAATTCGTTATAGGACTTGGAAATGAGTACCTAGAGAACATGACAGACCCTTCTAAAGCTCAAACTTGGATTCAACAGCATGTCCAACCTTACTTCTCACAGACCAAAATCACTTGCATCACTGTGGGAAATGAGGTGTTCAATAGCAATGATACTCAGCTAATGTTGAACCTCCTTCCAGCAATGCAAACTGTGCACGATGCCCTTGTTAATCTTGGACTAGATCAGCAAGTTACTGTCACAACTGCTCATTCCTTCAACATATTATCCAATTCCTACCCTCCTTCATCTGGGGCTTTTAGGGAAGATCTTGCACAATATATACAACCCCTTCTTGATTTTCATGCTCAAATCAACTCACCTTTCCTAATTAATGCATACCCTTTCTTTACATACAAAGACAACCCAGATGTGGTTCCCTTAAACTATGTTCTTTTTCAGCCAAATCAAGGCACGGTTGATCCAAATACCAATTTGCACTATGACAACATGTTATATGCTCAAATTGATGCTGTCTATGCTGCCATCAAACAAATGGGGCATGATAACATTCAAGTGAGGATTTCTGAGACTGGTTGGCCTTCTAATGGTGACCCTGAAGAGGTTGGAGCTACTCCACAGAATGCAGAACTGTACAATAGTAACTTGCTCAAGAGAATAGAGCAGAAACAAGGCACTCCTGCAAAACCATCTGTTCCTATTGATATTTATGTCTTTGCACTTTTTAATGAGGATTTGAAACCCGGTCCAGCTTCAGAGAGAAACTATGGCCTTTACTATCCTAATGGTACTCCAGTTTACAACATTGGATTGAAGGGTTATCTTCCACAAATGCCTATGGCAGCTAAATCCAATGTAAGTATACACATGATGGAACTTTAA 1113 0.4016 MRSRLHLQTGVLGHDDDQINLLVKIHGLGFGINYGQIANNLPLPSQVAVLIKSLNVSRIKLYDADPNVLVAFSESNVEFVIGLGNEYLENMTDPSKAQTWIQQHVQPYFSQTKITCITVGNEVFNSNDTQLMLNLLPAMQTVHDALVNLGLDQQVTVTTAHSFNILSNSYPPSSGAFREDLAQYIQPLLDFHAQINSPFLINAYPFFTYKDNPDVVPLNYVLFQPNQGTVDPNTNLHYDNMLYAQIDAVYAAIKQMGHDNIQVRISETGWPSNGDPEEVGATPQNAELYNSNLLKRIEQKQGTPAKPSVPIDIYVFALFNEDLKPGPASERNYGLYYPNGTPVYNIGLKGYLPQMPMAAKSNVSIHMMEL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g01032 370 Gene3D Glycosidases 29 352 - -
Vian5g01032 370 Pfam Glycosyl hydrolases family 17 31 346 IPR000490 GO:0004553|GO:0005975
Vian5g01032 370 SUPERFAMILY (Trans)glycosidases 30 346 IPR017853 -
Vian5g01032 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 30 349 IPR044965 GO:0004553|GO:0005975
Vian5g01032 370 FunFam Glucan endo-1,3-beta-glucosidase 14 28 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g01032 Vian-Chr5 31933494 31935457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g01032 80 361 Glycoside Hydrolase AT2G27500 69.258 2.05e-153 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g01032 - - gmx:100818948 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00589 11 6017655 6019267 Vian5g01032 5 31933494 31935457 PCT