Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00991 ATGGGTGTGTTCAGTGAAGACCTCAATCCAATTGTGATACGTGAAGTATGGGCATCGAATATAGAATCTGAATTCGAACTCATCCGAGAGTTAATTGATCGCTACCCTTTTATCTCCATGGACACTGAGTTTCCTGGAGTGATTTTCCGGCCGCAGGTTGATCCTACCAAACCCTACAACCACCACACTCGCCGCCCTGCCGACCACTACCGTCTCCTCAAGACCAACGTTGACGCGCTCAACCTCATCCAGGTCGGCCTTACACTGTCTGACTCAGCCGGCAACCTCCCTGGCGATGCCGGAAATCGCTTCATCTGGGAGTTTAATTTCCGCGACTTTGACGTGGCGCGTGATGCTTACGCGCCGGACTCCATCGCACTTCTCCGCCGCCAGGGGATCGACTTCGAGCGCAACACCACCAACGGTATTGACTCAACTCGCTTCGCGGAGCTGATGATGTCTTCAGGACTCGTGTGCAACGACGCCGTGAGCTGGGTCACCTTCCACAGCGCTTACGATTTCGGGTATTTGGTTAAGATCCTTACCCGACAGGATTTACCGACCCGGTTGGAGGAATTTTTAAACGTTGTGAAAGTGTTCTTTGGAGACAACGTTTACGATGTGAAGCACATGATGAGGTTCTGTGATACACTCTACGGTGGTTTGGATCGGGTTGCTCGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTACTGACCTGGCACGCGTTCCAGAAGATTGTGGATCTTTATTTTGTTAAGGATGAACACCAAAAACATGCTGGTGTGTTGTTTGGATTAGAAGTTCTGTGTTAA 840 0.5143 MGVFSEDLNPIVIREVWASNIESEFELIRELIDRYPFISMDTEFPGVIFRPQVDPTKPYNHHTRRPADHYRLLKTNVDALNLIQVGLTLSDSAGNLPGDAGNRFIWEFNFRDFDVARDAYAPDSIALLRRQGIDFERNTTNGIDSTRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRQDLPTRLEEFLNVVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDLYFVKDEHQKHAGVLFGLEVLC 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00991 279 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 11 276 IPR039637 GO:0004535|GO:0030014
Vian5g00991 279 FunFam Putative CCR4-associated factor 1 7 4 278 - -
Vian5g00991 279 Gene3D - 2 277 IPR036397 GO:0003676
Vian5g00991 279 Pfam CAF1 family ribonuclease 16 144 IPR006941 -
Vian5g00991 279 SUPERFAMILY Ribonuclease H-like 12 274 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00991 Vian-Chr5 31384723 31385562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00991 K12581 - gmx:100811298 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00614 11 6259760 6260626 Vian5g00991 5 31384723 31385562 PCT