Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00614 ATGGGTGTGCTCGACCGAGACTCTTCTCATTCCCAACCCAATCGGATCCTGATCCGTGAGGTCTGGGCCTCCAACCTTCAATCGGAGTTTCAGATCCTTCGCGACGTAATCGACGATTACCCTTTTGTGTCCATGGACACGGAATTCCCTGGAGTTATTTACCTCCCCCAAGTGGTGGCTCCGGCGGAACCCGCCCGCCGCCATCTTAAACCCTCCGAGCATTACAGCTTCCTCAAATCCAACGTTGATGTCCTCAACCTTATCCAGGTGGGACTCACGCTTTCCGATGCAGACGGTAACCTGCCCCACCTCGGGACCAGTAACCGTTTCATATGGGAGTTTAACTTCCGCGATTTCAACGTGGAGCGTGATTCCCACGCGCCGGACTCGATCGATCTTCTCCGCCGTCAGGGGATCGACTTCGGGCGCAACGCGGCGGAAGGCATCGACTCGTGGCTTTTCGCAGAACTGATGATGTCATCGGGGTTGGTGTGTAACGAGGCGGTGAGTTGGGTGACGTTTCATAGCGCGTATGATTTCGGGTATTTAGTTAAGATTCTGACCCGACGGAGCCTGCCCCATGGGTTGAAGGATTTCTTGAAGATTTTGAAAGCGTTTTTTGGAGAAAATGTTTATGACATCAAGCACATGATGCGGTTCTGTGACAGCCTGTATGGCGGTTTGGACCGGCTGGCGCTAACCCTGAACGTGGACCGGGCCGTTGGGAAGTGTCACCAGGCCGGGTCCGATAGCTTGCTGACGTGGCATGCGTTTAAGAGAATGAGGGATATTTATTTCGCGGAGGATGGGCCCCAGAAACATGCCGGTGTTTTGTTTGGATTGGAGCTTGCGTATTCCTCTAGTTGA 867 0.5363 MGVLDRDSSHSQPNRILIREVWASNLQSEFQILRDVIDDYPFVSMDTEFPGVIYLPQVVAPAEPARRHLKPSEHYSFLKSNVDVLNLIQVGLTLSDADGNLPHLGTSNRFIWEFNFRDFNVERDSHAPDSIDLLRRQGIDFGRNAAEGIDSWLFAELMMSSGLVCNEAVSWVTFHSAYDFGYLVKILTRRSLPHGLKDFLKILKAFFGENVYDIKHMMRFCDSLYGGLDRLALTLNVDRAVGKCHQAGSDSLLTWHAFKRMRDIYFAEDGPQKHAGVLFGLELAYSSS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00614 288 Gene3D - 6 284 IPR036397 GO:0003676
Vian11g00614 288 SUPERFAMILY Ribonuclease H-like 18 280 IPR012337 -
Vian11g00614 288 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 17 282 IPR039637 GO:0004535|GO:0030014
Vian11g00614 288 FunFam Putative CCR4-associated factor 1 7 8 285 - -
Vian11g00614 288 Pfam CAF1 family ribonuclease 21 149 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00614 Vian-Chr11 6259760 6260626 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00614 K12581 - gmx:100817875 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00614 11 6259760 6260626 Vian11g00614 11 6259760 6260626 ECH
Vian11g00614 11 6259760 6260626 Vian5g00991 5 31384723 31385562 PCT