Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00986 ATGTCCACCAAGGACTGCGGCCACCACCACTCTTCGCGCCGCCGTCTCATCCGCCTCGTCCTTGTCGGCGTCGCTGCCTTCATCCTCCTAGTCCTCTTCCTTGTCTTCCTCATATGGGTCATCCTCCGCCCGGCGAAGCCCCGCTTCACCCTCCAAGACGCCACCCTCTTCACCTTCAACCTCTCTTCCCCTATCCCCAACACCCTCTCTCTCACCATGCAGGTCACCCTCTCCGCCCACAACCCCAACTCCCGCATCGGCGTCTACTACCACGCACTCCACCTCCACGCCTCCTACCGTAGCCAGCAGATCTCCCTCCCCACCGCCCTCCCCGACACCTACCAGGGCCACCACGACTTCACCGTCTGGTCGCCCTTCCTCTACGGTAACACCGTCCCCGTCGCGCCGTTTGTTCTCGCCTCCCTGCAGCAGGACCAAAATGCCGGCACTGTTATGGTCAACGTTAAGATCAACGGGAGAGTGAAGTGGAAGGTCGGAACTTGGGTCTCTGGAAGGTACCATATTTATGTTAACTGTCCCGCGTATATTAGCTTCGCCGGAGATCGGAGCAATGCCGAAGGAGTGAAGTTCCACCTCTTACAAAGTTGTAGCGTTGATGTGTAG 624 0.5881 MSTKDCGHHHSSRRRLIRLVLVGVAAFILLVLFLVFLIWVILRPAKPRFTLQDATLFTFNLSSPIPNTLSLTMQVTLSAHNPNSRIGVYYHALHLHASYRSQQISLPTALPDTYQGHHDFTVWSPFLYGNTVPVAPFVLASLQQDQNAGTVMVNVKINGRVKWKVGTWVSGRYHIYVNCPAYISFAGDRSNAEGVKFHLLQSCSVDV 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00986 207 PANTHER OS05G0367900 PROTEIN 20 205 IPR044839 GO:0098542
Vian5g00986 207 Pfam Late embryogenesis abundant protein 76 179 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00986 Vian-Chr5 31327594 31328217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00986 9 179 EF-hand Containing Proteins AT5G21130 22.222 6.30e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00986 - - gmx:100819285 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00616 11 6267916 6268578 Vian5g00986 5 31327594 31328217 PCT