Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00616 ATGACCAAGGACTGCGGCCACCACAACAAGGACCGGCAGCAGCTCCTCCGCCGCGTATTCGCCGCCATCCTCGGCTTCATCCTCCTCGTACTCCTCGTAATCTTCCTCATCTGGATCATCCTCCGCCCCACCAAACCCCGTTTCGTCCTCCAAGACGCCACCGTCTACGCATTCAACCTCTCTTCCAGCGGCGCCATCCCCTCCCCCACCGCCCCCACCCCCAACACTCTAACCCTCACCATGCAGGTCACCCTCTCCGCCTTCAACCCCAACCACCGCATCGGCGTCTACTACACCAAACTCGATGCTTACGCCTCCTACCGCGGCCAGCAAGTCTCCCTCGCCACCGCCCTTCCCCCCACCTACCAGGGCCACCGCGACACCGCCGTCTGGTCCCCCTTCCTCTACGGCACCGCCGTCCCCGTCTCCCCCTTCATCCTCGAGATTCTCCGGCAGGACAAAACCTCCGGAGGAGTGCTGGTCAACGTCAAAGTCAACGGCAGAGTGAAGTGGAAAGTGGGGACTTGGGTCTCCGGAAGGTACCATATTAACGTGAACTGCCCCGCCTACATCAGACTCGCCGGTGACGATGAGGACGCCATCGGGGTAGCGGCTCCGGCGGTGAAGTTTCAGCTTTTTCAAAGTTGCATTGTTGATGTTTAG 663 0.6094 MTKDCGHHNKDRQQLLRRVFAAILGFILLVLLVIFLIWIILRPTKPRFVLQDATVYAFNLSSSGAIPSPTAPTPNTLTLTMQVTLSAFNPNHRIGVYYTKLDAYASYRGQQVSLATALPPTYQGHRDTAVWSPFLYGTAVPVSPFILEILRQDKTSGGVLVNVKVNGRVKWKVGTWVSGRYHINVNCPAYIRLAGDDEDAIGVAAPAVKFQLFQSCIVDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00616 220 PANTHER OS05G0367900 PROTEIN 17 202 IPR044839 GO:0098542
Vian11g00616 220 Pfam Late embryogenesis abundant protein 84 187 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00616 Vian-Chr11 6267916 6268578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00616 10 187 EF-hand Containing Proteins AT5G21130 22.951 4.94e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00616 - - pvu:PHAVU_005G120900g 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00616 11 6267916 6268578 Vian11g00616 11 6267916 6268578 ECH
Vian11g00616 11 6267916 6268578 Vian5g00986 5 31327594 31328217 PCT