Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00978 ATGGCATCTCAAAACACAAACCAGGAGAAATCAGGGGTGATTGGTCGAGTATTGGCCTTGCCAAAAGTTCTTAAGAAGAAGGTGTTGGGAATTTGTAGGTTAACAAAAGAGATAGCCCAAGATGATCCTAGAAAAATTATTCATTCACTAAAAGTGGGGCTTGCAATATCACTGGTTTCTCTTTTCTATTACTATCAACCACTATATGAGAATTTTGGTCTATCAGCAATGTGGGCTGTGATGACTGTAGTGGTAGTTTTTGAATATACAGTCGGAGCCACTCTAGGAAAAGGTTTGAATAGGACAATTGCAACATTGGCAGCTGGTGCTCTTGGTGTTGGTGCTCATTACTTAGCCAGCCTTTCTGGAGCAACAGGGGAACCAATATTGATTGGTGCATTTGTCTTTGTGCAAGCTGCCATAGCATCGTTTATAAGGTTTTTTCCGAAGGTGAAGGCGAGATATGATTATGGGATGCTTATATTCATCTTGACATTCTCTTTGATATCCGTGTCTGGTTTTCGAGAAGTTGAAGTGTTGGAAATGGCACACAAGAGACTCTCAACCATATTTATAGGGGGTTCAGCTTGTGTGATGATTTCCATTTTTGTTTGCCCTGTGTGGGCTGGTGAAGAGTTCCACTATTCCATTGCTCACAAGCTGGAAATACTCGGCGATTTCTTGGAAGCTTTTGTACATGAATACTTCAAACCACAAGAAGGAGAATCTGAAGACAGCAAAGGAGATTCTAAAGACAAATCATTTTTGGAAGGTTATAAAAAGGTTCTCAATTCTAAAAGTATAGATGACTCTTTGGCAAATTTTGCAAAATGGGAGCCAGGTCATGGCAAGTTTAGATTTCGTCATCCTTGGGACCTATACCTCAAGATTGGTGCTCTTTCTCGCCAATGTGCATATCGAATGGAAGCTATAGATGCAAACTTTAATTCAGATATCAAAGGATCCCAGGATTTTCGTTCCACCATCCAAGAGTTATGCTCAGAAATGAGTTTGGAATCTAGCAAAGCCTTCAAGGAACTAGGATCATCGATTAGAAGAATGACTAGGCCTTCTTCTTCGGACACACATGTTGCAAACGCAAAATCTGCAGTGAAGAGCCTCAAGTCGTTGCTCCAATCATGTTCAAGGAAAGAAACAGACCTTTTATCACTTCTACCAGCTGCAACAGTGGCTTCACTACTGATTGATATTGTGGAAATCACAGAGAAAATAGCAGATTCGGTGAATGATCTTGCCACCCTGACAGCTTTTGAGGTTGTAGATACAGATAAATCTCCTAAAGTACCATCACAATCTTCACACTGTGAATGTGATGAACCAGTTCCCAAAACTGATCATCTCCAAGTCGTTATTCTAATTGAGGAGTCAGCACTAGCTGTGTCAGATAGTGAAAAATCAAACGTAGTTTGA 1431 0.4046 MASQNTNQEKSGVIGRVLALPKVLKKKVLGICRLTKEIAQDDPRKIIHSLKVGLAISLVSLFYYYQPLYENFGLSAMWAVMTVVVVFEYTVGATLGKGLNRTIATLAAGALGVGAHYLASLSGATGEPILIGAFVFVQAAIASFIRFFPKVKARYDYGMLIFILTFSLISVSGFREVEVLEMAHKRLSTIFIGGSACVMISIFVCPVWAGEEFHYSIAHKLEILGDFLEAFVHEYFKPQEGESEDSKGDSKDKSFLEGYKKVLNSKSIDDSLANFAKWEPGHGKFRFRHPWDLYLKIGALSRQCAYRMEAIDANFNSDIKGSQDFRSTIQELCSEMSLESSKAFKELGSSIRRMTRPSSSDTHVANAKSAVKSLKSLLQSCSRKETDLLSLLPAATVASLLIDIVEITEKIADSVNDLATLTAFEVVDTDKSPKVPSQSSHCECDEPVPKTDHLQVVILIEESALAVSDSEKSNVV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00978 476 Pfam Aluminium activated malate transporter 37 419 IPR020966 GO:0015743
Vian5g00978 476 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 24 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00978 Vian-Chr5 31221577 31223865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00978 26 474 Miscellaneous Gene Families AT2G27240 54.889 9.93e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00978 K25841 - gmx:100813430 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00624 11 6363395 6365409 Vian5g00978 5 31221577 31223865 PCT