Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00954 ATGGCGGAAACCCTAAGCCCCAACCCATTGGTGGGTCAGAAGCAGAGGTTCCGCATTCAGTCCCCCACCAGCACCTTCTTCTTGGGCTCCAACAACGACCAGCTCGAGCGGGCCGAGGCCCGCGCGGCCCGCGCAGCCGCCATCCGCCGCAAGAGCCTCGGCTTCAGCCAACCTCTTCTGGCCAACTCGGATCCCTGCCTCAACAAACAGCAAATCCTCGATTTGTTCCAAAACTGCATCAAACTCGCCAGCGAGAACAAAATTAATCAGAAAAATACATGGGAGTTGAACCTGATCGATCACCTTACTGATATCATCAAGGCCGAACAAGAAGATGACTCGGAGACTAATTTTCAAAAAGCAAGCTGCACTCTTGAGGCTGGAGTCAAAATTTATTCATTAAGAGTAGATTCAGTGCATTCTGAGGCATATAAAGTTCTTGGTGGGATGAATCGAGCAGGCCAAGAAGCTGAGCAAGACACTAGCCTGGATGGTGTTAATATCGAAAGTGGAGGAGAAGAAAGCAGGAAAGAAACAAGCAAAAAGTTGTCACCTTTGTCAACATTGGAATCATCTTTCGAAGCACTTAATGTAAAGAAGTTTGATGCTGCATTTGTCGTGGATCCTCTCTATCGCCAGACAACAGCAAAATTTGATGAAGGTGGAGCCAAGGGTCTTTTAATGAATAATCTTGGTGTATACGGTGGATGTAGGGTGCTCTTTGATTCACTAGAAGTGCCTGCGAAGTGTATGGCAAAACAAAATCAATCTGATATTTCAGATACTATTGATCTTTCTTTTGTCAAAGATTGTATCGAGCAGATGGTGTTGGACATGCGTGTGAAGGATGAAATTTCTCCAACTCTGACGACTATAGTAAACTTATTTGATGAGAGTAACAGAAGGCCCACTGATGTTCAACATCACGACAATAATTTAGCTGAAGATCTTGACACTTCTTTTAATAATGAAAGTGGTTTTGACAGAGAAGAATATGAGAACAGCAATGCCTGGAGTGACGATCACGATGACCATACGGTTGTTGCCGATGTAGGCTATAATGATGATGCAGATCCAAGTTTTCCCAATTACCCTCAGGACAGCGATGGGCCATTTCCCTCCCCAGACGCTGATATGGATGACAGATTTGACAGTGTTGACGGATATTTGTTTTTGAGTCTGGGTTTTAATTCAAAGCAAAACGCATGGGCAGGTCCAGATCATTGGAAGTATCGAAAATCCAAAGCCTCAGAGGTTCATCCTACTTCCGAAGATGGGTCGACCCTAATAAGTAGGCAGCCAAAGAGTAAGAGACAGGCAGAAGTTGAATTAAATTTCACAAATTCTCTTGAGAAGGAAATGCTAGATATATTTTCTTCTCCCAAGAATCCCAAATCGTTACTACTCCCCGAAAGCAAATTGCCTTGCAATACAAAACTTCCCGAGGACTGCCACTATCAGCCAGAGGATCTTGTCAAGCTGTTCCTTCTGTCTAATGTGAAGGTAGTTTCTTTTAGTTATGAGTGTCTCGGGAGGAGGGCAAACAGGTTCCCAGACGGAGCTAGAGAACAATCCAATGAATATGAATCATTCCATACTTGGGACAATGGAAGTGTTGGTGGGGATGACTTTGGTGACTACGGAGGTGATCTTCATAGTGATGTGGAGGACTCCAACACTCTTATTAGTCAGCCTCGCCAGGTCAATAAAATTGAAGTCCAGTATGACAAGACTTCCAAACAAGTTGATGTTCATGCACTAAAAATTACTATTTGGGACCATGTTCAAGAATCTGTTAAACTTCCTTCACAGGGTCAAAAAGATACCCTATCTTTCAGGAGTATATTGGCCAACTTTCCTAGCGAATGCAATGCTGCCGCAACCGTTAGTGACATATCTCCTCACTTGTGCTTCATATGTCTATTGCATTTGGCAAACGAGAAAGGATTGAGCATTCAAAACTGCTCCAACTTAGATGATCTTACCATATTCCTTCCACACGTTGCTGACTCTATAAGGGGCACAGTTTAG 2031 0.4382 MAETLSPNPLVGQKQRFRIQSPTSTFFLGSNNDQLERAEARAARAAAIRRKSLGFSQPLLANSDPCLNKQQILDLFQNCIKLASENKINQKNTWELNLIDHLTDIIKAEQEDDSETNFQKASCTLEAGVKIYSLRVDSVHSEAYKVLGGMNRAGQEAEQDTSLDGVNIESGGEESRKETSKKLSPLSTLESSFEALNVKKFDAAFVVDPLYRQTTAKFDEGGAKGLLMNNLGVYGGCRVLFDSLEVPAKCMAKQNQSDISDTIDLSFVKDCIEQMVLDMRVKDEISPTLTTIVNLFDESNRRPTDVQHHDNNLAEDLDTSFNNESGFDREEYENSNAWSDDHDDHTVVADVGYNDDADPSFPNYPQDSDGPFPSPDADMDDRFDSVDGYLFLSLGFNSKQNAWAGPDHWKYRKSKASEVHPTSEDGSTLISRQPKSKRQAEVELNFTNSLEKEMLDIFSSPKNPKSLLLPESKLPCNTKLPEDCHYQPEDLVKLFLLSNVKVVSFSYECLGRRANRFPDGAREQSNEYESFHTWDNGSVGGDDFGDYGGDLHSDVEDSNTLISQPRQVNKIEVQYDKTSKQVDVHALKITIWDHVQESVKLPSQGQKDTLSFRSILANFPSECNAAATVSDISPHLCFICLLHLANEKGLSIQNCSNLDDLTIFLPHVADSIRGTV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00954 676 PANTHER CONDENSIN COMPLEX SUBUNIT 2 20 666 IPR022816 GO:0000796|GO:0007076
Vian5g00954 676 MobiDBLite consensus disorder prediction 421 436 - -
Vian5g00954 676 MobiDBLite consensus disorder prediction 155 183 - -
Vian5g00954 676 PIRSF Condensin_H 547 666 IPR022816 GO:0000796|GO:0007076
Vian5g00954 676 PIRSF Condensin_H 1 550 IPR022816 GO:0000796|GO:0007076
Vian5g00954 676 MobiDBLite consensus disorder prediction 417 436 - -
Vian5g00954 676 Pfam Condensin complex subunit 2 67 505 IPR022816 GO:0000796|GO:0007076
Vian5g00954 676 Pfam Condensin complex subunit 2 551 663 IPR022816 GO:0000796|GO:0007076
Vian5g00954 676 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00954 Vian-Chr5 30803330 30807488 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00954 K06676 - gmx:100799781 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00954 5 30803330 30807488 Vian5g00954 5 30803330 30807488 ECH
Vian11g00656 11 6816311 6820143 Vian5g00954 5 30803330 30807488 PCT