Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00913 ATGGATTCTCAATCGGCGCAGAAGGAGGTTAACGAGCCATTGGCAGTACCGGAAGAATCGTTACCACAACAACCTTCGTTTTCTCGATCTTTCAGCTCCAGACATGGCTCACAGAATGAACTCGAGAACCTACTCACAGACACCAGCGTCCCTTACTCCAAGCGTATTGGTCCAGCAACATGGCTCGAGTTCAAACTCCTCTTTCACCTTGCTGCTCCTGCGGTCATCGTCTACCTCCTCAACTATGTCATGTCTATGTCCACACAAATCTTCTCCGGCCACCTCGGTAACCTCGAACTTGCCGCCTCTTCCCTCGGAAACAATGGCATCCAAATCTTCGCTTATGGTCTCATGTTGGGTATGGGAAGTGCCGTTGAGACGCTGTGCGGACAAGCGTACGGGGCGAAGAAATTCCACATGTTAGGTGTGTACCTGCAACGATCCACGGTGCTGCTGACACTCGCGGGCGTTCTGCTAACCGTAATCTACGTCTTAGCGGAACCAATCCTGCTGTTTCTCGGCGAGTCGCCGCAAATCGCGTCGGCAGCTGCGCTTTTCGTGTACGGGCTCATCCCTCAGATCTTCGCGTACGCCGTGAACTTCCCCATCCAGAAGTTTCTCCAGGCGCAGAGCATCGTGGCTCCGAGCTCGTACATTTCATGCGCCACGCTCGTGTTCCACCTCGTGCTCAGTTGGTTGGCGGTGAATAAGCTGGGGATGGGCCTGTTTGGCGCCTCGCTGGTGCTCAGCATCTCTTGGTGGGTCATCGTGCTGGCGCAGTTCGTTTACATCGTGAAGAGCGAGCGGTGCAAGCAGACTTGGGGCGGCTTCACCTTCGAAGCGTTTTCGGGGTTGCCGGAGTTTTTCAAACTGTCGGCGGCTTCCGCCGTTATGCTCTGCCTAGAGACGTGGTACTTCCAGATTCTGGTGCTGCTCGCGGGGTTGCTTCCCGAGCCTGAATTGGCTCTCGATTCCCTTTCCATTTGCACCACACTGTCCGGATGGGTTTTCATGATCTCAGTTGGATTTAATGCAGCTGCAAGTGTGAGAGTGAGCAACGAGCTAGGAGCAAGAAATCCAAAATCAGCTTCATTTTCTGTGGTGGTGGTGACAGTGATATCTTTCATAATATCAGTTATTATAGCAGTGGTGATTTTGTCGCTAAGAGATGTCCTTAGCTATGCCTTCACTGAAGGCGAAGAGGTGGCTGCTGCAGTCTCAGATCTTTGTCCCCTCCTTGCCCTTTCCATTGTTCTCAACGGCATTCAGCCTGTTTTGTCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCGTACGTAAACGTCGGTTGCTATTACGGAATTGGCATTCCATTGGGTTCTGTAATGGGTTTCTATTTCAAACTCAATGCAAAGGGAATATGGTTGGGAATGCTTGGTGGCACGGTTCTGCAAACAATTATTTTGATGTGGGTCACATTTAGAACTGATTGGAAGAAAGAGGTTGAGGAAGCAGAAAAGAGGTTGAATGCGTGGGAAGACATAAAGGAGCCACTCATAGTCAAGAACTGA 1557 0.5112 MDSQSAQKEVNEPLAVPEESLPQQPSFSRSFSSRHGSQNELENLLTDTSVPYSKRIGPATWLEFKLLFHLAAPAVIVYLLNYVMSMSTQIFSGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGAKKFHMLGVYLQRSTVLLTLAGVLLTVIYVLAEPILLFLGESPQIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSSYISCATLVFHLVLSWLAVNKLGMGLFGASLVLSISWWVIVLAQFVYIVKSERCKQTWGGFTFEAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPEPELALDSLSICTTLSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTVISFIISVIIAVVILSLRDVLSYAFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGSVMGFYFKLNAKGIWLGMLGGTVLQTIILMWVTFRTDWKKEVEEAEKRLNAWEDIKEPLIVKN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00913 518 MobiDBLite consensus disorder prediction 21 35 - -
Vian5g00913 518 NCBIfam MATE family efflux transporter 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian5g00913 518 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Vian5g00913 518 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian5g00913 518 Pfam MatE 295 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian5g00913 518 Coils Coil 490 510 - -
Vian5g00913 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 59 493 - -
Vian5g00913 518 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00913 Vian-Chr5 30209208 30213401 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00913 K03327 - gmx:100790437 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00913 5 30209208 30213401 Vian5g00913 5 30209208 30213401 ECH
Vian11g00677 11 7137689 7143441 Vian5g00913 5 30209208 30213401 PCT