Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00677 ATGGGTTCGGTGGAGACGGAACCGCTCTTGTCAGGGTTTTCTGCAGGGGAAGAAACTCCTCGCTCAAATTCCAAGCACGTGTCCGATGGGGAACTTGAGAGAATTCTCACAGACGACACCCTCCCTTTCCTCCACCGTCTCGGGGCCGCCTTTTGGGTGGAGTTCAAGCTCCTCTTCTTCCTCGCCGCCCCTGCTGTGTTTGTCTACGTCGTCAACTACGTCATGTCCATGTCCACGCAAATGTTCTCCGGTCACCTCGGTAATCTTGAACTCGCCGCCTCCTCCCTCGGCAACACCGGCATCCAACTCTTAGCTTATGGCCTCATGTTAGGCATGGGGAGTGCAGTTGAGACGCTGTGCGGACAAGCATACGGTGCGCAGAAGTTCGGGATGCTAGGTATATACATGCAGCGCTCAACGGTGCTTCTTTCATTGGCCGGCATCCTTATGACCGTCGTATACGTCTTCAGTGAGCCAATTTTACTCTTCCTCGGCGAGTCCGCGGAAATTGCTGCGGCAGCGGCGCTTTTCGTGTACGGTTTGATTCCTCAGATCTTCGCGTACGCGGTGAACTTCCCTATCCAGAAGTTTATGCAGGCGCAGAGCATAGTGGCGCCGAGCGCATACATCTCAGCGGGGGCGTTAGTGTTGCATCTGGTGCTGAGCTGGTTGGTGGTGTACAAGATTGGGTTGGGACTCTTGGGAGCGTCACTGACGCTGAGCCTGTCGTGGTGGATCATCGTGATTGCTCAGTTCGTGTACATCGTGAAGAGCCCGAAGTGCAAGCAGACGTGGCAGGGGTTCACGTTGCAGGCTTTTTCCGGGTTACCGTCGTTCTTCAAGCTGTCTGCTGCTTCCGCCGTTATGCTGTGTTTGGAGACGTGGTATTTTCAAATTCTGGTGCTGCTCGCAGGCCTGCTTCCTCAACCTGAATTGGCCCTTGATTCGCTATCAGTCTGTACTACACTTTCTGGCTGGTTTAACATGATCTCCGTTGGATTCCAAGCTGCCGCAAGCGTGAGGGTGGGTAACGAACTCGGAGCAGGAAATCCAAAATCAGCGTCCTTTTCGGTGGTGGTGGTGACAGCGATTTCTTTCATCATATCAGCTATTATAGCAATAGTGATTCTTGTACTTAGGGATGTTATCAGCTATGCCTTCACAGGGGGTGAAGTGGTTGCTGCTGCAGTTTCAGATCTTTGCCCACTGCTTGCTCTTTGTATTGTCCTCAATGGCGTCCAACCCGTCTTATCTGGGGTGGCTGTTGGATGTGGTTGGCAAGCTTTCGTGGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCTTACCACTGGGAGCGGTTCTAGGCTTTTATTTCGACTACGGTGCCAAGGGAATATGGCTGGGAATGCTTGGTGGCACAGCCATGCAAACAGTGATTCTATTGTGGGTTACATTTAGAACGAACTGGAATAAGGAGGTGGAGGAAGCAGCCAAGAGATTGAGCAAATGGGAGGACAAGAAGGAGGAAGCACTAGACTGA 1524 0.5223 MGSVETEPLLSGFSAGEETPRSNSKHVSDGELERILTDDTLPFLHRLGAAFWVEFKLLFFLAAPAVFVYVVNYVMSMSTQMFSGHLGNLELAASSLGNTGIQLLAYGLMLGMGSAVETLCGQAYGAQKFGMLGIYMQRSTVLLSLAGILMTVVYVFSEPILLFLGESAEIAAAAALFVYGLIPQIFAYAVNFPIQKFMQAQSIVAPSAYISAGALVLHLVLSWLVVYKIGLGLLGASLTLSLSWWIIVIAQFVYIVKSPKCKQTWQGFTLQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSVCTTLSGWFNMISVGFQAAASVRVGNELGAGNPKSASFSVVVVTAISFIISAIIAIVILVLRDVISYAFTGGEVVAAAVSDLCPLLALCIVLNGVQPVLSGVAVGCGWQAFVAYVNVGCYYGVGLPLGAVLGFYFDYGAKGIWLGMLGGTAMQTVILLWVTFRTNWNKEVEEAAKRLSKWEDKKEEALD 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00677 507 Coils Coil 481 507 - -
Vian11g00677 507 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
Vian11g00677 507 MobiDBLite consensus disorder prediction 1 29 - -
Vian11g00677 507 Pfam MatE 286 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian11g00677 507 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vian11g00677 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 49 484 - -
Vian11g00677 507 NCBIfam MATE family efflux transporter 64 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00677 Vian-Chr11 7137689 7143441 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00677 K03327 - gmx:100795338 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00677 11 7137689 7143441 Vian11g00677 11 7137689 7143441 ECH
Vian11g00677 11 7137689 7143441 Vian5g00913 5 30209208 30213401 PCT