Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00896 ATGTTCAAACGAAGAAAAAAGGATCAGAGTTTTAGTAGTGATAGCAGTGCCTCAGATACAGCCATGCCTCCTTTTCCTCACGTCAGAACAACTCCAACACCTTCATTCAAATCCTTCCTCTTGATGCTCTCCATTCTCCTCAACCTCTACCTCCTCTTTCTCACGTGGGCCCCATCATCCGCGCCACTTACCTCACCCACTCGCATCACCACCCTCTCCCCGACCACGCGCCGCCACCTCCTTTTCTCCGTCGCCTCCTCCTCCCTCTCATGGCATCGCCGCCTCCCCTACCTCCGCCTCTGGTACTCCCCCAACTCCACCCGCGCCCTCGCTTTCCTCGACAAACCACCGCCACTTCCTCTGAACTCCTCCTCCTCCTCCTTTTACCCGCCGGTCGTGATCTCCGCTGATACCTCCGCGTTCCCCTATACTTTCCGCGGGGGGCTGAGGTCTGCGATTCGAGTGGCGCGAGCTGTGAAGGAGGCCGTGGATCGTAATGAGTCAGACGTGCGGTGGTTCGTGTTTGGCGACGACGATACGGTGTTCTTCGTCGACAACGTGGTTCGGGCGCTAGCGCGGTACGACCACCGCCGGTGGTTCTACGTCGGGAGCAACTCCGAGAGCTACGAGCAGAACGTGAAGTACTCGTTCCAGATGGCGTTCGGCGGTGGCGGCTTCGCGATCAGCAGTTCCCTCGCCAGGGTTTTGGCGAGGGTTTTGGACTCTTGTTTGAGGAGGTACGCACACTTGTATGGCAGCGATTCTAGGATTTATTCCTGCGTTGCTGAGCTCGGTGTTGGCTTGACTCATGAACCTGGCTTTCATCAGTTGGACATGCGGGGGAATTTGTTCGGGATGCTAGCTGCACATCCATTATCTCCGTTATTGTCCCTTCATCACTTGGAAGCAATGGAGCCCATATTTCCCGACATGGACAGAGTACAGGCTTTGGAACATCTTGTTGCCGCTGCAAATGTAGATCCTGCCAGGATCCTGCAGCAAACTTTCTGCTATGATCAGTCAAATTCTTTGACTTTCTCTGTTTCTTGGGGTTTTGCTATCCAAGTTTATCAAGGAAATGAACTTGTACCTGACCTCCTTTCGGTGCAGAGAACTTTTGTTCCATGGAGGAGGGGTAGTAAAGTCAATGCCAATTTCATGTTTAACACCAGAGACTATCTCAGAGATCCTTGTAAAAGGCCTTCAGTATTTTTCTTGAAAAGTGCGACATCTCATAAAAGGGGCATTTGGAGCAGTTACAGTAGGCATGATGTTGGGAACTGCTTTGAATCCAATGTTAGACAGCTCGAGCAGATCATAGTTTTTTCACGGAAGCTGGAGCTTAACAATGACCAGATGAATGCTCCCCGTCGTCAGTGCTGTAGCGTCTTACCACCATCTACTAATGATACAACCAATCTTCACATTAGACAGTGTGAAATCGATGAACTGATCTCCATGCAATCATAG 1470 0.5143 MFKRRKKDQSFSSDSSASDTAMPPFPHVRTTPTPSFKSFLLMLSILLNLYLLFLTWAPSSAPLTSPTRITTLSPTTRRHLLFSVASSSLSWHRRLPYLRLWYSPNSTRALAFLDKPPPLPLNSSSSSFYPPVVISADTSAFPYTFRGGLRSAIRVARAVKEAVDRNESDVRWFVFGDDDTVFFVDNVVRALARYDHRRWFYVGSNSESYEQNVKYSFQMAFGGGGFAISSSLARVLARVLDSCLRRYAHLYGSDSRIYSCVAELGVGLTHEPGFHQLDMRGNLFGMLAAHPLSPLLSLHHLEAMEPIFPDMDRVQALEHLVAAANVDPARILQQTFCYDQSNSLTFSVSWGFAIQVYQGNELVPDLLSVQRTFVPWRRGSKVNANFMFNTRDYLRDPCKRPSVFFLKSATSHKRGIWSSYSRHDVGNCFESNVRQLEQIIVFSRKLELNNDQMNAPRRQCCSVLPPSTNDTTNLHIRQCEIDELISMQS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00896 489 FunFam Fringe-related protein 69 313 - -
Vian5g00896 489 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g00896 489 Pfam Protein of unknown function, DUF604 211 461 IPR006740 -
Vian5g00896 489 Gene3D - 70 310 - -
Vian5g00896 489 PANTHER FRINGE-RELATED 36 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00896 Vian-Chr5 29866225 29869249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00896 63 489 Glycosyltransferase AT4G15240 62.005 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00896 - - gmx:100813277 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00896 5 29866225 29869249 Vian5g00896 5 29866225 29869249 ECH
Vian5g00896 5 29866225 29869249 Vian11g00696 11 7358973 7360571 PCT