Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00870 ATGCCTGAGGCTCCTAGCTACAACAAGCCAAATGGCAAAGTTGATGTTGCTAGTGATAGTAGCATCACCAAGAGCAGTAACGATAAAGCACTGAAATACATTGAGGATGTTACTAGCAACGCTGATGAAATTCAGAAGAGGGTCCTTGCTGAGATCCTTTCCTCCAGCGCACATGCTGAGTACCTTCAACGCCATGGCTTAGATGGGCGCACTGACAGAGACAGTTTCAAGAACATCATGCCTGTTGTCACATACGAGGATTTAAAGCCAGATATTGATCGTATAGCTGATGGTGATACCTCCTCAATTTTATGTTCCAAACCTATTTCTGAGTTCCTCACTAGCTCTGGAACATCGGGTGGGGAGAGAAAGCTGATGCCAACGATAGAAGATGAACTTGAGAGAAGATCATTACTGTACAGCCTCTTGATGCCAGTGATGGATCAGTTTGTTCCAGGTTTAGAGAAAGGCAAGGGTATGTACTTTCTGTTCGTAAAATCAGAAGCCAAAACCCCAGGGGGGCTCCTAGCTCGTCCAGTTTTAACCAGTTACTACAAGAGTTCACATTTCAATAACTCTAAACAAAGATATGATCCCTACACAAACTACACCAGCCCCATTGAGTCCATTCTCTGCCTCGACTCTTACCAAAGCATGTATTCTCAGATGCTTTGTGGACTTTCACAAAACGAACAAGTTCTTCGTGTTGGGGCAGTTTTCGCCTCAGGCTTCATCCGTGCCATCAAGTTCCTAGAAAAGCATTGGGTGAGTTTGTGCCGTGACATAAGAAATGGCACCCTAGACCCTGAAATCAGTGACTCATCTTTGAGAGACGCCATCATGAAGATACTCAAACCAAACCCCAAGCTTGCGGATTTCATAGAAGCTGAGTGCATGAAGGAGTCGTGGAAGGGGATCATCACTAGGGTATGGCCAAACACCAAGTATGTTGATGTTATTGTTACAGGAACCATGTCGCAGTATATTCCAATATTGGATTACTACAGCAATGGTCTCCCTCTTGTCTGCACCATGTATGCTTCGTCTGAATGTTACTTCGGCCTCAATTTGAACCCTTTGTGTGAACCCAGTGAGGTGTCTTACACCCTCATTCCCACCATGGCCTACTTTGAGTTCTTGCCACTCGAAAATACCAAGGGACATGGCAATATTTCTATTTCTCACCCAGACCAGGAACTTTTGGTTGATCTTGTGGATGTTGAGTTGGGTCAAGAATATGAGCTTGTGGTCACCACTTATGCGGGACTTTACAGGTACAGGGTTGGTGACATACTCCGTGTAGCGGGATTCAAGAACAAGGCACCTCAATTCAACTTCGTGTGCCGAAAGAATGTGGTTTTGAGCATTGATTCTGACAAGACCGATGAAGTTGAGCTGCAAAATGCTGTGAAGAATGGAGCAAACCGTCTTGCAGAGTTCGGTGCATCACTGACAGAGTACACAAGCTGTGTTGACACGTCCACGATCCCAGGTCACTATGTTCTGTACTGGGAGATTAGCACTAATGACGAGACCCCAATTCCAGGTTCTGTTTTTGAGGAGTGTTGCTTTGAAGTTGAAGGGTGTCTGAACAGTGTTTATAGACAAGGAAGGGTATCAGAATCCATTGGAGCATTGGAAATCAAGATTGTGGAGAATGGAACCTTTGACAAGCTTATGGACTTTGCTCTGAGCCAGGGTGCGTCCATAAATCAGTATAAGACACCTCGTTGTGTGAAATATGCTCCCATCGTTGAACTTCTGGATTCCAAGACAGTTTCCAGTTACTTCAGTACAAAATATCCACACTGGGTCCCTGGTCACAAGAAATGGTGCATGTTCCCTTGA 1848 0.4497 MPEAPSYNKPNGKVDVASDSSITKSSNDKALKYIEDVTSNADEIQKRVLAEILSSSAHAEYLQRHGLDGRTDRDSFKNIMPVVTYEDLKPDIDRIADGDTSSILCSKPISEFLTSSGTSGGERKLMPTIEDELERRSLLYSLLMPVMDQFVPGLEKGKGMYFLFVKSEAKTPGGLLARPVLTSYYKSSHFNNSKQRYDPYTNYTSPIESILCLDSYQSMYSQMLCGLSQNEQVLRVGAVFASGFIRAIKFLEKHWVSLCRDIRNGTLDPEISDSSLRDAIMKILKPNPKLADFIEAECMKESWKGIITRVWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCEPSEVSYTLIPTMAYFEFLPLENTKGHGNISISHPDQELLVDLVDVELGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVKNGANRLAEFGASLTEYTSCVDTSTIPGHYVLYWEISTNDETPIPGSVFEECCFEVEGCLNSVYRQGRVSESIGALEIKIVENGTFDKLMDFALSQGASINQYKTPRCVKYAPIVELLDSKTVSSYFSTKYPHWVPGHKKWCMFP 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00870 615 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 27 601 IPR004993 -
Vian5g00870 615 MobiDBLite consensus disorder prediction 1 26 - -
Vian5g00870 615 Pfam GH3 auxin-responsive promoter 34 580 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00870 Vian-Chr5 29334578 29337925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00870 20 599 EF-hand Containing Proteins AT1G23160 49.153 0.0 559
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00870 K14487 - gmx:100819676 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00870 5 29334578 29337925 Vian5g00870 5 29334578 29337925 ECH
Vian11g00715 11 7598009 7599880 Vian5g00870 5 29334578 29337925 PCT