Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00715 ATGCCTACCATCGAAGAAGAACAAGAGAGAAGATCATTGCTTTACAGCTTGTTGATGCCAGTGATGGATCAGGTTGTGCCTGGTTTGGAGAAAGGAAAAGGCATGTACTTTCTGTTCACAAAATCAGAAGCCAAAACTCCTGGTGGCCTCCTTGCTCGTCCAGTTCTCACCAGCTATTACAAAAGCTCACAGTTCAAGCACCGCAAACGTGATCCCTACACAAACTACACCAGCCCCAATGAAACCATTCTCTGCCCTCACTCTTACCAAAGCATGTACTCTCAGTTGCTCTGTGGCCTTTGTCAAAACGAGGAAGTTCTTCGCGTTGGGGCAGTCTTCGCTTCCGGTTTCATCCGTGCCCTTAAGTTCCTCGAAAAGCACTTCCTTTGTCTCTGCAATGACATAAGAACGGGCACCCTCGACGCCAAAATCACTGACCCCTCTGTGAGAGAAGCTGTGATGAAAGTCCTGAAACCAAATCCCACGCTTGCGGATTTCATTGAAGCCGAATGCCTGAAGGGGTCGTGGAAGGGAATCATCACCAGGATATGGCCTAACACCAAGTATGTTGATGTTATTGTCACGGGAACCATGTCTCAGTATATTCCCATATTGGATTATTATAGCAATGGTCTTCCTCTTGTGTGCACCATGTACGCTTCTTCTGAGTGCTACTTTGGCCTCAATTTGAACCCCTTGTGTGATCCAAGTGAGGTGTCTTACACACTCATTCCCACCATGGCCTACTTTGAATTCTTGCCCGTCTATCATATCAATGGACATACTGATTCCATTTCTAACCTAGACCATGAACATCTCGTAGATCTTGTTGATGTCAAGTTGAATCAGGAGTACGAGCTTGTGGTCACCACTTACGCAGGACTTTATAGGTACCGGGTTGGCGACATCCTCCGTGTAGCCGGATTCAAGAACAAGGCTCCTCAGTTCAACTTCGTGTGTCGAAAGAACGTGGTTCTCAGCATTGATTCTGATAAAACCGACGAAGTTGAGCTCCACAATGCTGTCAAAACTGGTGCCGATCATCTTCCACAATTCGGTGCATCTCTCACTGAATACACCAGTTGCGTGGACACGTCAACAATCCCAGGCCATTACGTTGTCTATTGGGAAATCAACACAAATGGGGGGCAAATCCCAGAAATTCCTTCTTCTGTTTTTTGTGATTGTTGCCTGGCAATTGAAGAATCTCTGAACAGCGTGTACCGGCAGGGAAGGGTGTCGGAGTGTATTGGAGCCTTGGAAATTAGGGTGGTTGAGAATGGCACGTTTGACAAACTCATGGACTTTGCTCTGAGCCAAGGTGCCTCCATAAACCAATACAAGACACCTCGTTGCGTCACTTATGTGCCCATTATCGACCTTCTTAACTCCAAAGTTGTTTCCAATTACTTCAGCCCCAAATGCCCAACTTGGGTCCCTGGTCACAAGAATTGGTTCACAGAAAATTAG 1470 0.466 MPTIEEEQERRSLLYSLLMPVMDQVVPGLEKGKGMYFLFTKSEAKTPGGLLARPVLTSYYKSSQFKHRKRDPYTNYTSPNETILCPHSYQSMYSQLLCGLCQNEEVLRVGAVFASGFIRALKFLEKHFLCLCNDIRTGTLDAKITDPSVREAVMKVLKPNPTLADFIEAECLKGSWKGIITRIWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPVYHINGHTDSISNLDHEHLVDLVDVKLNQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELHNAVKTGADHLPQFGASLTEYTSCVDTSTIPGHYVVYWEINTNGGQIPEIPSSVFCDCCLAIEESLNSVYRQGRVSECIGALEIRVVENGTFDKLMDFALSQGASINQYKTPRCVTYVPIIDLLNSKVVSNYFSPKCPTWVPGHKNWFTEN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00715 489 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 1 475 IPR004993 -
Vian11g00715 489 Pfam GH3 auxin-responsive promoter 1 454 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00715 Vian-Chr11 7598009 7599880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00715 1 472 EF-hand Containing Proteins AT1G23160 50.833 1.10e-158 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00715 K14487 - gmx:100818961 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00715 11 7598009 7599880 Vian11g00715 11 7598009 7599880 ECH
Vian11g00715 11 7598009 7599880 Vian5g00870 5 29334578 29337925 PCT