Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00847 ATGGCCACTGTTACTTCTTCCTTCCATTTCTCCACTCTCACTCAATCTTCTCAGAGGAACTTCACCCTCTCTTCCAATTCACCAACCTTTCGCTTCCGCTTCCGCGTTGGTTTCTCATGCCACTATCTTGGAGTTCGAGCTTCCAGTTATGCTTCCAAAATGGTTGTTCGGTGCTCCTCTTCCTCTGTCACAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGAATATAAGCGACCAATTCCAAGTATCTATAACACGGTGCTGCAAGAGCTCATTGTTCAGCAACATTTAATGAGATACAAGAGATCATATCGCTATGACGCTGTATTTGCCCTTGGCTTTGTCACTGTATATGAGCAACTCATGGAAGGGTATCCAAGTGATGAGGACCGAGATGCGATCTTCCAAGCATACATTAAGGCACTGAAAGAAGATCCTGAACAATACAGAGTTGATGCAAAGAAATTGGAAGAATGGGCTCGAGCTCAAAACTCAACTTCACTAGTTGAGTTCTCTTCCAGAGAAGGAGAAGTTGAGGGAATATTAAAGGATATTGCAGAAAGAGCAGGAGGAAAGGGGGATTTCAGTTACAGTCGTTTCTTCGCAATAGGCCTCTTTCGCCTTCTTGAGTTAGCAAATGCTATGGAACCAACAATTTTGGAAAAGCTTTGTGCGGTTTTGAATGTCAACAAAAGAAGCGTGGATCGGGATTTGGATGTGTATCGTAACTTGCTTTCTAAGTTGGTTCAAGCTAAAGAGTTGCTAAAGGAATATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCCGAACCACAAAAGACTAATGAGGCCATTACCCAACAGCAATTTTCTAGCCTTTAG 876 0.4269 MATVTSSFHFSTLTQSSQRNFTLSSNSPTFRFRFRVGFSCHYLGVRASSYASKMVVRCSSSSVTDPPTVSETKLNFLKEYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDAVFALGFVTVYEQLMEGYPSDEDRDAIFQAYIKALKEDPEQYRVDAKKLEEWARAQNSTSLVEFSSREGEVEGILKDIAERAGGKGDFSYSRFFAIGLFRLLELANAMEPTILEKLCAVLNVNKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERAEPQKTNEAITQQQFSSL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00847 291 Pfam Thylakoid formation protein 68 273 IPR017499 GO:0010207|GO:0015979
Vian5g00847 291 Coils Coil 245 275 - -
Vian5g00847 291 MobiDBLite consensus disorder prediction 266 291 - -
Vian5g00847 291 Hamap Protein Thf1 [thf1]. 63 271 IPR017499 GO:0010207|GO:0015979
Vian5g00847 291 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 286 IPR017499 GO:0010207|GO:0015979
Vian5g00847 291 NCBIfam photosystem II biogenesis protein Psp29 64 270 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00847 Vian-Chr5 28845166 28850354 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00847 - - gmx:100779964 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00847 5 28845166 28850354 Vian5g00847 5 28845166 28850354 ECH
Vian11g00747 11 8023353 8025434 Vian5g00847 5 28845166 28850354 PCT