Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00747 ATGGCGGCTCTCACTTCTCTCTCTTTCTCTGCAGTCACTCACTGCCCAGAAAGAAAAAAACTAACCTTTTCCTCCACTCCTTTTCTCGCCACCTCTTCAGACTTCTTTGGCCTCCGCACCCATTTCTCCTACCACCATGTTGGCGTTCGAGCTTCCAACTCCACTTCTAACATGGTTGTTCAATGCATGTCTTCTGTCACAGATGCTCCCACTGTTTCGGAGACAAAGCTGAATTTCCTGAAGGCATATAAGCGACCAATTCCTAGTATCTACAACACGGTGCTGCAGGAGCTTATTGTGCAGCAACATTTAATGAGATACAAGAGATCATACCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAAGGGTATCCCAGTGATGAGGACCGAGATGCTATCTTCCAAGCCTACATTAAGGCGTTGAAGGAAAATCCACAAGAATACAGAATAGATGCAAGGAAGTTGGAAGAGTGGGCTCGGGTTCAAAACCCAATTTCCCTTCTTGAGTTTTCATCCAAAGAAGGAGAAGGTGAGGGGATTCTAAAGGAAATAGCAGAAAGAGCAGCGGGGAAAGGTGAATTCAGTTATAATCGTTTCTTTGCAGTTGGACTTTTTCGTCTGCTTGAGTTGGCAAATGCTACGGAACCAACAATTTTGGACAAGCTTTGTGCGGCTTTGAACATCAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAACCTGCTCTCAAAGTTGGTTCAAGCAAAAGAGCTGCTGAAGGAGTATGTTGACAGGGAAAAGAAGAAAAGGGATGAAAGGACTGAACCACAAAAGGCTAATGAGGCCATTACAACATGTTTGGGTGAACAACTTCCAGGCTTGTAG 894 0.4441 MAALTSLSFSAVTHCPERKKLTFSSTPFLATSSDFFGLRTHFSYHHVGVRASNSTSNMVVQCMSSVTDAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYIKALKENPQEYRIDARKLEEWARVQNPISLLEFSSKEGEGEGILKEIAERAAGKGEFSYNRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTEPQKANEAITTCLGEQLPGL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00747 297 NCBIfam photosystem II biogenesis protein Psp29 67 273 IPR017499 GO:0010207|GO:0015979
Vian11g00747 297 Hamap Protein Thf1 [thf1]. 66 274 IPR017499 GO:0010207|GO:0015979
Vian11g00747 297 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 293 IPR017499 GO:0010207|GO:0015979
Vian11g00747 297 Coils Coil 248 275 - -
Vian11g00747 297 Pfam Thylakoid formation protein 71 276 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00747 Vian-Chr11 8023353 8025434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00747 - - gmx:100814341 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00747 11 8023353 8025434 Vian11g00747 11 8023353 8025434 ECH
Vian11g00747 11 8023353 8025434 Vian5g00847 5 28845166 28850354 PCT