Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00837 ATGAATGAAAGTTTGAAGGAGTTGGAGCCAACATATGCACATGTTGGAAACAATTTGGTTTTGCAAGTGACCAGGGAAGATATCCAAACCCAGCAGCAGATCTCTCTCTTCAGCTCCAATTATGAGGCGAAGGAGCGCAGATTTTCGAAGGCCAGGGAGGAGGAGGCTGCAGGATGTAGTGTGGTTGACATCAGAACTTTCAGGCGTGACAGGGTTATTGAAGGCTTCAATGTTACGGATGAAATGTTAAGCCATGAGTCTGTGACCAGACAAATTAATGATCAAATCTCACTAGCAAAAGCTTTTGTTGTAATTGCAAAAGAAAGTAACAACCACCAATTTGCTTGGGAGTTAACATCTCAGATCCGCATTTCACAGATTTTTCTCTCGAATGCTGCCACGAGACGTACTCCATTAACAATCAAGGAATCACAATATGCAATTCGTGATATGGCCTTATTACTGTTTCAGGCCCACCAGCTCCATTATGACAGTGCAAGCATGATCATGAGACTGAAAGGAAAAATTCAAGCTCTTGAAGAACAGATGAGTTCTGCAAGTGAGAAGAGTTCAAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAGAGCCTATTTTGCCTTGGTGTCAGGTTGACATCTAAATGGTTCACGAATCTTAGCCTGCAGAAGAGTTTAAAGGACCAAAGACAAGTGGACATTAAACTCAAGGATAATGATCTTTACCACTTCTGTGTCTTTTCTGATAACATTCTTGCTACCTCGGTTGTGATCAATTCCACTTCGATAAATTCCAAAAACCCAGATAAGATTGTTTTTCACCTTGTCACAGATGAAATAAATTACGCTGCAATGAAGGCATGGTTTTCTTTGAACGATTTTCGAGGGGTGACAGTTGAAGTTCAAAGGTTTGAAGACTTCAGCTGGTTGAATGCCTCATACGTTCCTGTGCTTAAGCAGCTACAGGACTCAGAGATACAGAACTATTATTTCAAAGGCAACAATGATGATAACAAAACTCCCATCAAGTTCAGGAATCCGAAATATCTGTCCATGCTTAACCACCTGAGGTTCTACATCCCTGAAGTTTTTCCCGAGCTGAAGAAAGTGGTGTTCCTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTACCATTGATTTGAACGGGAATGTCAATGGAGCCGTTGAGACATGCATGGAGACATTTCATAGATACCATAAATACTTGAACTACACACACCCTCTAATAAGAACACATTTTGACCCTGATGCTTGTGGGTGGGCATTTGGGATGAATGTGTTTGATTTGGTTCAATGGAGGAAAAGGAACGTGACAGGAATCTACCACTATTGGCAAGAAAAGAATGCAGACAGGACATTGTGGAAACTTGGTACATTGCCACCTGGGTTGTTAACCTTCTATGGGCTTACCGAGCCCTTGGATCCATCATGGCATGTGCTGGGTTTTGGCTACACAAATGTTGATCCTCACTTGATAGAAAGAGGGGCTGTTATACACTTCAATGGAAACTCCAAACCGTGGTTGAAGATTGGGATGGAAAGGTACAAGCCTGTGTGGGAAAAGTACGTCGATTATTCTCACCCATTATTGCAACAGTGTAATTTTCATTGA 1644 0.4161 MNESLKELEPTYAHVGNNLVLQVTREDIQTQQQISLFSSNYEAKERRFSKAREEEAAGCSVVDIRTFRRDRVIEGFNVTDEMLSHESVTRQINDQISLAKAFVVIAKESNNHQFAWELTSQIRISQIFLSNAATRRTPLTIKESQYAIRDMALLLFQAHQLHYDSASMIMRLKGKIQALEEQMSSASEKSSKYGQIAAEEVPKSLFCLGVRLTSKWFTNLSLQKSLKDQRQVDIKLKDNDLYHFCVFSDNILATSVVINSTSINSKNPDKIVFHLVTDEINYAAMKAWFSLNDFRGVTVEVQRFEDFSWLNASYVPVLKQLQDSEIQNYYFKGNNDDNKTPIKFRNPKYLSMLNHLRFYIPEVFPELKKVVFLDDDVVVQKDLSDLFTIDLNGNVNGAVETCMETFHRYHKYLNYTHPLIRTHFDPDACGWAFGMNVFDLVQWRKRNVTGIYHYWQEKNADRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGFGYTNVDPHLIERGAVIHFNGNSKPWLKIGMERYKPVWEKYVDYSHPLLQQCNFH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00837 547 Coils Coil 169 189 - -
Vian5g00837 547 CDD GT8_like_1 242 535 - -
Vian5g00837 547 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 243 539 IPR029044 -
Vian5g00837 547 Pfam Glycosyl transferase family 8 249 521 IPR002495 GO:0016757
Vian5g00837 547 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 80 546 IPR029993 GO:0047262
Vian5g00837 547 SUPERFAMILY Nucleotide-diphospho-sugar transferases 242 545 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00837 Vian-Chr5 28700657 28705311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian5g00837 65 547 Glycosyltransferase AT2G20810 79.588 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00837 K13648 - cave:132183226 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00837 5 28700657 28705311 Vian5g00837 5 28700657 28705311 ECH
Vian11g00756 11 8092339 8095106 Vian5g00837 5 28700657 28705311 PCT