Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00756 ATGCGACGAAGAGCGACAGATTTTCGCAGGCCAGTGCGTAGGAAGGTTCCAGATGCTTTGTGGTGGGCATTGTGCTGTGCAGTGATTCTTCTCTTTGTCTATATTCTGAGCAAAGGGAACAAAATTGAGTCCAGACCCGCTTTGTCCAAGAGAACTTACAAGCATGATAAGATTATGGAAGGCCTTAATATTACTGAAGAGATGTTAAACTCTAACTCGGTCACGAGACAACTCAATGATCAGATATCTCTGGCAAAAGCCTTTGTCGTAATTGCCAAAGAAAGTAACAATCTCCAATTTGCTTGGGAATTAAGTGCCCAGATCCACAATTCACAGAGGCTCCTCTCAAATGCTGCAACTAGGCGTGTTCCTTTGACAACAAGGGAAACAGAAAAGGCCATCCGTGATATGGCATTATTGTTATACCAAGCCCAGCAGCTCCATTATGATAGTGCAACCATGATCATGAGATTCAAAGCAAAAATTCAAGCTCTTGAGGAACAGATGAATTCAGTTACTGAAAAGAGTTCGAAATATGGACAAATAGCTGCTGAAGAAGTCCCAAAAAGTCTGTACTGCCTTGGTGTTCGGTTGACAACAGAATGGTTCAGAAACTTTAATTTGCAAAAGAAATCGAAGGACAAAAGACAAATGGAGATGAAGCTCAAGGACAACCACCTTTACCACTTCTGTGTTTTCTCTGATAACATTCTTGCAACTTCAGTAGTGGTCAATTCAACTGCAATGAATTCTAAAAATCCCAATATGATTGTTTTTCACCTTGTCACTGATGAAATAAACTATGCTGCGATGAAGGCATGGTTTGCGGTGAATGATTTCAATGGAGTGATTGTGGAAGTTCAGAAGTTTGAAGACTTTACTTGGTTAAATGCTTCATATGTTCCTGTGCTCAAGCAACTTCAAGACTCTGAAATACAAAGCTACTACTTTTCAGGCAACAGTGATGAGGGAAGAACACCTATCAAGTTTCGTAACCCTAAATATCTATCCATGCTTAATCACCTGAGATTCTACATACCTGAAGTCTTTCCCGCACTAAAGAAGGTGGTGTTCTTGGATGATGATGTTGTGGTTCAGAAGGATCTTTCTGATCTTTTTTCCATTGATCTGAATGGTAATGTAAATGGAGCTGTTGAAACATGCATGGAGACATTTCACAGATACCACAAATATTTGAACTACTCTCATCCTCTTATACATGCACATTTTGACCCTGATGCTTGTGGATGGGCATTTGGGATGAATGTATTTGATTTGGTTGAATGGAGGAAAAAGAACGTGACTGGCATTTATCACTACTGGCAGGAAAAGAACGTAGACAGGACATTGTGGAAACTTGGTACCTTGCCGCCTGGACTGTTGACATTTTATGGATTAACTCAGCCCTTAGATCCATCGTGGCACGTTTTGGGTTTTGGCTACACCAATGTTGATCCTCAGTTGATAGAGAGGGGTGCTGTGCTACATTTCAATGGAAATTCCAAACCATGGTTGAAGATTGGGATAGAGAAGTACAAGCCCCTGTGGGAAAAATATGTTGAATACTCTCATCCTTTATTGCAGCAGTGTAACTTCCACTGA 1602 0.407 MRRRATDFRRPVRRKVPDALWWALCCAVILLFVYILSKGNKIESRPALSKRTYKHDKIMEGLNITEEMLNSNSVTRQLNDQISLAKAFVVIAKESNNLQFAWELSAQIHNSQRLLSNAATRRVPLTTRETEKAIRDMALLLYQAQQLHYDSATMIMRFKAKIQALEEQMNSVTEKSSKYGQIAAEEVPKSLYCLGVRLTTEWFRNFNLQKKSKDKRQMEMKLKDNHLYHFCVFSDNILATSVVVNSTAMNSKNPNMIVFHLVTDEINYAAMKAWFAVNDFNGVIVEVQKFEDFTWLNASYVPVLKQLQDSEIQSYYFSGNSDEGRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVVQKDLSDLFSIDLNGNVNGAVETCMETFHRYHKYLNYSHPLIHAHFDPDACGWAFGMNVFDLVEWRKKNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTQPLDPSWHVLGFGYTNVDPQLIERGAVLHFNGNSKPWLKIGIEKYKPLWEKYVEYSHPLLQQCNFH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00756 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 230 525 IPR029044 -
Vian11g00756 533 Coils Coil 155 175 - -
Vian11g00756 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 531 IPR029044 -
Vian11g00756 533 CDD GT8_like_1 228 520 - -
Vian11g00756 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 64 532 IPR029993 GO:0047262
Vian11g00756 533 Pfam Glycosyl transferase family 8 230 507 IPR002495 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00756 Vian-Chr11 8092339 8095106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00756 1 533 Glycosyltransferase AT2G20810 79.291 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00756 K13648 - gmx:100792018 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00756 11 8092339 8095106 Vian11g00756 11 8092339 8095106 ECH
Vian11g00756 11 8092339 8095106 Vian5g00837 5 28700657 28705311 PCT