Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00595 ATGATTGAATTTAAGGATGGATTTGAAGAATCACTGGTGACCCTTTTGTTGTTGTGTCTGTGGATAGCTGTTATTTTCATCTCTTTGGTTTTGGGGATGAGTAGAAATGATGACCAGAAACAACAGCACCTTCTTCACGGAGGTGTTGCTGCTGGTAGTGGCGGCAAAACCAACAGCAAGAACAACCGCAATGGCTTTATTCCCAGCACCTTTCGTACTTTCTCTGGTTACCTCAAGATTGTTTCATCAGGTGCTTCTACCGTCGCTCGGTCAGCTGCTGCCTCCTTTGCATCGTCGATTTTGGATAAGCATGGGGATACTGACCGTGATCGGGTTATTTGGGCTGGGTTTGACACGTTAGAGGACCAGGGAGAAGTCATTCGGCAAGTACTTCTTCTAGGCTATTGGTCCGGCTTCCAGGTTTGGGATGTTGATGATTCAGATAATATCTGTGACCTTGTTTCCAAACACGATGGTCCTGTTTCTATTATGCAAATGGTACCTAGTCCAACTGTATCGAAGAGACTGGAGGACAAGTTTGCAGACAAGCGCCCATTGTTGGCAGTATGTGTGAATGATTTGTTGGTGGGGAGAGGCAAAATACAAGAGGGGTTGGTTGCCACTTGCGACGTGGGCACTTTAAACCACCATGACCAAGAGAATGGAAACTATCTGCCATCAACTGTTCAATTTTATTCTCTGAGATCCCAATCATATGTTCATACACTAAACTTTAGATCAGTTGTTTATTCTATAAGATGTAGTTCTCGAGTAGTTGCTGTTTCTCTAGTCACTCAGATACACTGTTTTTCTCCCACAACTTTATTAAGGGAGTATATTTTACATACTAATCCTGTAGTCATGAGTTGTCCTGGTTCTGGAGGCATTGGATTTGGACCACTGGCAGTGGGTCCAAGATGGCTGGCCTATAGTGGAAGCGCTACTGTAATAGCTTCTTCTGGGCGTGTCAGCCCACAGCATTTAACACCTTCTGCAAGCTTTCCTGGCTTTTCTTCAAATGGGAGCTTGGTTGCACACTATGCCAAAGAGTCTAGCAAGCATCTTGCTGCTGGGATTGTGAACCTTGGAGATATGGGGTACAAGAAACTTTCCAGTTACTGCTCAGAACTTCTCCCAGAAAACAGTGGTTCAATACAATCTGTGAATTCAAGCACAAAAGGAAATGGAATCATCCATGGCCATTCAACAGATGTGGAAAGTGTTGGGATGGTCATTGTAAGAGATATTGTCAGTAAAAATGTCATTGCTCAATTTCGGGCCCACAAGAGCCCCATTTCAGCTTTATGCTTTGATCCTAGCGGCACCATCTTAGTGACTGCTTCTGTTCAGGGGCATAACATTAATGTTTATAAGATAATGCCTGGATATGACAGAGTGTCAGCATCTGATGCTGGCTCTTCTTATGTTCATCTCTACAGGCTGCAACGTGGCATAACAAATGCAGTTATTCAAGATATCAGTTTTGGTGTTGATAGCAGGTGGATTATGATTAGTTCTTCAAGGGGAACTAGCCATCTGTTTGCTATAAATCCTCAAGGAGGACCTGTAAATATTCTATCATGTGACAATAGTTTAACTGAAAAGGATGGTTTGAGTGTTATGCCTAATCAGGCAGTTCATTGGCCTTGTAGTTCAGCTGTAAAAATTTGTAAACAGCAGAGCCTCTGTGCTGCTGGTCCTCCTATCACACTCTCTGTTGTTAGCAGAATTAGGAATGGATCTAATGGCTGGAGAGGCACTGTAACTGGTGCCGCTGCAGCTGCAGCTGCGACAACTAGGTTGAGTTCCATTTCTGGGGCTATTGCTTCTTCTTTCTATAACGTAGAAGGCAGAAGTACCTTGTGTGTTAATGGGAACTATTCCAAGGAAAAGTATCATCTGTTGGTCTTTACATCCACAGGTTCAATGGTACAATATGCTCTGCAGACAATTAACTGTCAAGATTCAGATGTTTCTGGAGTAATTCCTGCACATGAGTCTGCCCCTGTGACTGATGCGAAAGTAGTTATTGAGCCTATCAAGAAGTGGAATATAAGTTGTAGGCATAGTTGGAGAGAGGGAGTAGAAAATATAGACATTTATGGAGAGAATGGAGTTTCAGACATCAATAAAGTATGCTCTGAGGAAGTAAAGGATAATATCATCAGCCCTAAAATGAAGAATGTATCCATGAAATCGAATCCACGTTCTGAGAAAGAACATCATTTGTATATTTCAGAAGCTGAACTGCAAATGCATGAAGCAAAGACTCAATTGTGGGCAAAGACTGAGATATATTTTCATTCAGTGGCTAAAGAGGCTGGTTTGATGATGGATGAAGAAGCTGCTTCTGGAGGGGAATTTGAGATTGAAAAGATCCCGACTCGTGTGATAGAAGCTAGGTCGAAAGACTTGGTTCCAATTTTTGACTTTATTCAGACTTCAAAATTTCAACATACAAGGTTTGATGACTAA 2475 0.423 MIEFKDGFEESLVTLLLLCLWIAVIFISLVLGMSRNDDQKQQHLLHGGVAAGSGGKTNSKNNRNGFIPSTFRTFSGYLKIVSSGASTVARSAAASFASSILDKHGDTDRDRVIWAGFDTLEDQGEVIRQVLLLGYWSGFQVWDVDDSDNICDLVSKHDGPVSIMQMVPSPTVSKRLEDKFADKRPLLAVCVNDLLVGRGKIQEGLVATCDVGTLNHHDQENGNYLPSTVQFYSLRSQSYVHTLNFRSVVYSIRCSSRVVAVSLVTQIHCFSPTTLLREYILHTNPVVMSCPGSGGIGFGPLAVGPRWLAYSGSATVIASSGRVSPQHLTPSASFPGFSSNGSLVAHYAKESSKHLAAGIVNLGDMGYKKLSSYCSELLPENSGSIQSVNSSTKGNGIIHGHSTDVESVGMVIVRDIVSKNVIAQFRAHKSPISALCFDPSGTILVTASVQGHNINVYKIMPGYDRVSASDAGSSYVHLYRLQRGITNAVIQDISFGVDSRWIMISSSRGTSHLFAINPQGGPVNILSCDNSLTEKDGLSVMPNQAVHWPCSSAVKICKQQSLCAAGPPITLSVVSRIRNGSNGWRGTVTGAAAAAAATTRLSSISGAIASSFYNVEGRSTLCVNGNYSKEKYHLLVFTSTGSMVQYALQTINCQDSDVSGVIPAHESAPVTDAKVVIEPIKKWNISCRHSWREGVENIDIYGENGVSDINKVCSEEVKDNIISPKMKNVSMKSNPRSEKEHHLYISEAELQMHEAKTQLWAKTEIYFHSVAKEAGLMMDEEAASGGEFEIEKIPTRVIEARSKDLVPIFDFIQTSKFQHTRFDD 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00595 824 SUPERFAMILY WD40 repeat-like 227 518 IPR036322 GO:0005515
Vian5g00595 824 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 58 821 IPR045142 GO:0006914
Vian5g00595 824 Pfam Breast carcinoma amplified sequence 3 566 807 IPR022175 -
Vian5g00595 824 Gene3D - 127 516 IPR015943 GO:0005515
Vian5g00595 824 SMART WD40_4 418 458 IPR001680 GO:0005515
Vian5g00595 824 FunFam Breast carcinoma-amplified sequence 3 337 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00595 Vian-Chr5 21586633 21591461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00595 - - var:108340445 1609.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g00595 5 21586633 21591461 Vian5g00595 5 21586633 21591461 ECH
Vian11g00911 11 10569640 10574681 Vian5g00595 5 21586633 21591461 PCT